| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2030 |
|---|
| Symbol | |
|---|
| ID | 4018522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2409255 |
|---|
| End bp | 2410748 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956055 |
|---|
| Product | tryptophan halogenase |
|---|
| Protein accession | YP_563036 |
|---|
| Protein GI | 91793385 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAG AAATTTCAAA AGTGGTGATT GCCGGTGGCG GCACTTCGGG CTGGATGACA
GCGGCCATGT TGGCCAAGAT GTTCAAAAAA ACCCTCGATA TCCACTTAGT CGAATCAGAA
GATATCGGTA CAATCGGTGT GGGTGAAGCC AGTATACCGC CACTTAAACT GTTCAATAAT
GCCTTAGGGA TCCCCGAAGC TGAGTTTATA CACGCTACCC AAGCCAGCAT CAAACTGGGG
ATAGAATTTG AGCATTGGGG CCAGCAGGGC GAGCGCTACA TGCATGCTTT TGGCAATATT
GGCAAAGATC TCGGCTTGAC GCCCTTTCAC CACTTCTGGC TTAAATCTCA ACAAACAAAC
ACATCTGACT TTTGGCAATT CTCAGTTAAC TATCAAGCTG CTAAACAAAA CAAATTCGCT
CCCCTTGAAA GCCTTGCCAA TAACCAAATG GCCGGGATCA CTCATGCCTA TCATTTTGAT
GCCAACCTTT ATGCTAAGTT GCTAAGGCAA TACAGTCAGC AGGCTGGCGT CAATCGCCAT
GAAGGGAAAA TAGTCACAAC CAAGCTAGAT ACCCAGGGCA ATATCGAGTC GCTTGAACTC
AGTGATGGCC GGGTTATCAT GGGTGACCTA TTTATCGACT GCTCAGGCTT TGCCGCCTTA
CTCATAGGCC AAGCACTAAA GGTAGACTAT GACAATTGGC AGCACTGGTT GCCCTGTGAC
AGTGCCTATG CCGTCCCTAG TACTAACTCA GGCCCATTAA AGCCTTACAC CCAATCCATA
GCCCATGCAG CAGGTTGGCA ATGGCGCATC CCTTTGCAGC ATAGAACCGG CAATGGTTTG
GTCTATTGCA GTCAATATAT GAGTGATGAA GCGGCCAAGC AATTGCTACT GCAGAACTTG
GAGGGTGAAG CTTTAGCTGA GCCTAGAAAA ATCAGCTTTA CTACAGGCAG ACGCGTCAAA
CAGTGGCATA AAAACTGTGT CTCTATCGGT TTATCCAGCG GTTTTCTAGA ACCCCTCGAA
TCCACCAGCA TACATCTTGT ACAATCGGCC ATTACGCGAT TAATTAAATG CTTCCCTAAC
CAAGGAATAA AAGATATCCA AGTCGCTGAA TTTAATCGTC AATCACAGAA AGAGTTCGAA
CAAATTCGTG ACTTTATCAT CTTACATTAC CACCTCAATC AAAAAAATAA TGATGCTGGT
TTATGGCAAT ACTGCCGTGA AATGACAATT CCAGAATCCT TGCAGCGAAA AATCGACTTA
TTTCGAACCA GCGGCACTGT GTTTAGAGAG CAAGATGAGC TGTTTACTGA AGCCGCTTGG
GTGCAAGTGT TGTTGGGCCA AGGGATAACA CCAGAAGATT ACCATCCACT GGCTAACGCA
ATATCTGGCG CTGACCTCAC TGACTTTTTA GGCAATATGA AGAGTATTAT TTCAGCGTCT
GTGTCTAGGC TGCCAAGTCA TGAACACTTC CTTGCCAGTT TATTATTGCG ATAA
|
|---|
| Protein sequence | MKSEISKVVI AGGGTSGWMT AAMLAKMFKK TLDIHLVESE DIGTIGVGEA SIPPLKLFNN
ALGIPEAEFI HATQASIKLG IEFEHWGQQG ERYMHAFGNI GKDLGLTPFH HFWLKSQQTN
TSDFWQFSVN YQAAKQNKFA PLESLANNQM AGITHAYHFD ANLYAKLLRQ YSQQAGVNRH
EGKIVTTKLD TQGNIESLEL SDGRVIMGDL FIDCSGFAAL LIGQALKVDY DNWQHWLPCD
SAYAVPSTNS GPLKPYTQSI AHAAGWQWRI PLQHRTGNGL VYCSQYMSDE AAKQLLLQNL
EGEALAEPRK ISFTTGRRVK QWHKNCVSIG LSSGFLEPLE STSIHLVQSA ITRLIKCFPN
QGIKDIQVAE FNRQSQKEFE QIRDFIILHY HLNQKNNDAG LWQYCREMTI PESLQRKIDL
FRTSGTVFRE QDELFTEAAW VQVLLGQGIT PEDYHPLANA ISGADLTDFL GNMKSIISAS
VSRLPSHEHF LASLLLR
|
|---|
| |