| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2029 |
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| Symbol | |
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| ID | 4018521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2406467 |
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| End bp | 2409193 |
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| Gene Length | 2727 bp |
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| Protein Length | 908 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956054 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_563035 |
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| Protein GI | 91793384 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCTAT TTAAACCAAG CCTGCTGACC TTAGCGTTAG TTGCAGCCGG TGCAAGCATG
CACGGCTATG CTGCTGAAGA GACAAAAACA ACGGCTAGTG CCGATGAAAA TATCGAAGTC
ATTAGTGTCA CAGGTATACG TCGTAGCCTA CAAGAATCAC AATCATTAAA AATGTCATCT
TCCTCAATAG TCGAAGCGAT TTCAGCTGAA GACATAGGTA AACTGCCAGA CGTCAGTATC
GCCGAATCCC TAGCACGTTT GCCTGGTGTG TCAGCGCAAC GCCTTGATGG CCGTGCTAAC
GTTATCTCTA TTCGTGGCCT AGGGCCAGAC TTCACCACAG CAACGTTAAA CGGTCGTGAG
CAAGCTTCAG TCAATGACAA TCGCGGCGTT GAATTTGATC AATACCCTTC AGAATTACTC
AATCGTGTGG TTGTCTATAA GACACCCGAT GCCTCTGTAA TGGCACAAGC CATTGGCGGC
ACAGTTGATA TGCAAACTAT CAGCCCACTG ACTCACGGTC AACAAGCCAT AGCAGTGTCT
TTACGGGGTG AAATGAATGA TTTAGGCTCA CTGAACTCAG GTTCAAGTGA TAAAGGCTAC
CGCGGCAGTA TCTCCTATAT CGATCAGTTT GCTGACGACA CTATAGGTAT CGCCCTAGGT
TATGCCCGCA TGATGTCACC TAACCAAGAA GAAAGATGGC AAGCTTGGGG TTACCCAAAC
TTAGATTATG TGGACACCAA TCCAAAAGTA CTTGGCGGTG CTAAACCATT TGTACGTTCA
AGTGAACTTG AGCGTGATGG CGTGTTAGCC GTATTTGAAT ATGCACCCAA CGATGCATTC
CGCTCAGTTG TTGATGTGTA CTACACTAAA TTTTCTGACG ACCAACGCCT ACGCGGTATC
GAAATCCCGG CTCAATGGGG CACTAATGGC GGCGTCACAG CAACGACTAC GACTGACGGT
CTTGTGACTG CTGGCACCAT CAAGGGCGCC GAGGTGGTTG TACGTAATGA CGTTAACAAA
CGTGATGCCG ACTCACTGTC GATTGGTTGG AACAACAAGT ACCACATCAA TGATAACTGG
AGTGTCACTG CCGATCTGGC CTTGTCGAAA GCAGATAGAA CTGACATAGG CATGGAAAGT
TACACTGGCA CAGGTCGTGG TACAGGTATT GGTGCTGTCG ATAACCTAGG TTTTGCCAGT
AATGGTGACG GTGGTTACAT CTTCACTCCT AATTTAAATT ATGCCGATCC AAACCTGATT
AAATTGGGCG ATCCGCTGGG TTGGGGCAGT CCATTAGGCG CCAATACCCA AGATGGTTTT
ATCAACAAGC CACAAGTTGA AGATGAACTC ACCTCACTAC GCTTAAGCGC CGAATACCTA
TTCGATGAGG GTGCAGTCAA GAGCGTTGAA TTTGGTGTTA ATCGCACTGA TCGTGATAAA
ACCAAGCTAG ACAAAGGCTA CTATTTAACC CTCAAAGGGT ATGATGGCTC TGCCAATTAT
TTAGAATCAG TGCCTTCTCA GTACCTATTA TCCCCTACCT CACTGGCCTT TTTCGGCATG
GGTGATGTGT TAAGTTATGA CTCCTTAGCC TTCTATAACG ATGGCAATTA CACTGAGACA
GACGTAGCAA ACGTGGACTT GTCCCGTGCC ACTAACTCTT GGGCTGTATA TGAAGAAGTG
ACTACGGCCT ATGTGAAAGC CAACCTTGAA TCTGAAATGT TTGGTTTGCC TGTAACAGGT
AATGTGGGCC TGCAAGCTGT GATGACAGAT CAAAACTCTG ACGGTACAGT CGCCACTGTA
GAAAACGGGA AAGTGATTAT TACCCCCCGT AATGCGGGTG ACAGCTACAC AGAATGGCTA
CCTAGCATGA ACCTAGGTTT TGAAGTCGCC GATAAGCAAG TGGTACGTCT TGCCGCAGCA
CGTACCTTAA CCCGTGCACG CATGGACAAG ATGAATTCCA ATGTGAATTT CAGCTATAAC
GCCAACCCAA ATGACGGCGT TAACTGGACT GGCGGTGCCG GTAACCCTGA GCTTCGTCCA
TGGCTTGCTC GCCAATACGA CATCAGCTAT GAAAACTATT TTAGCGATCA AGGTTATTTC
TCAGTGGCCG TGTTCTACAA AGATCTAGAA AACTTTGTTT TTGATCAGCA AGCACTGTTT
AACTTTGGCG CTATTTTCCC AAATCAACCG GGTAACCCCA TAGGGACTGT TACTCAGCCT
TTGAATGGTC AAGGTGGTTA TGTTCAAGGT GTTGAAGCCT CATTGTCCTT AGACTTTGGT
CAATTTGCCG ATGTGCTCAG TGGTTTTGGT ACCATCTTAA GTGGTTCTTA TAACGACAGT
GAAGTGAAAG AAACGCCAGA TAGTGACCCA ACGGCACTAC CTGGCTTATC AGAGAAGACC
TTCAACGCCA CGGTTTATTA TGAGAATGAA GGTTTTGAGG CACGCATTAG CTCTCGCTAC
CGTTCAGACT TCTTAGGTGA AGTCACAAAA ATCAGCTTGC AACGTGAAAA CGTCAACATC
AAGGCTGAAA CTGTGGTCGA TGCGCAAATC GGTTATGACT TCTCTAAAAG CGGTATCGAT
GCTCTCTATG GCTTATCGGT TCAGTTCCAA GTGAATAACT TAACTAATGA ACCGTTTATC
TCCTATACGG GTGACGATCA ACGCTTCGTA CGCGATTACC AAAACTACGG CCGTAACTTT
ATGTTAGGTG CCAACTATAA GTTCTAA
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| Protein sequence | MLLFKPSLLT LALVAAGASM HGYAAEETKT TASADENIEV ISVTGIRRSL QESQSLKMSS
SSIVEAISAE DIGKLPDVSI AESLARLPGV SAQRLDGRAN VISIRGLGPD FTTATLNGRE
QASVNDNRGV EFDQYPSELL NRVVVYKTPD ASVMAQAIGG TVDMQTISPL THGQQAIAVS
LRGEMNDLGS LNSGSSDKGY RGSISYIDQF ADDTIGIALG YARMMSPNQE ERWQAWGYPN
LDYVDTNPKV LGGAKPFVRS SELERDGVLA VFEYAPNDAF RSVVDVYYTK FSDDQRLRGI
EIPAQWGTNG GVTATTTTDG LVTAGTIKGA EVVVRNDVNK RDADSLSIGW NNKYHINDNW
SVTADLALSK ADRTDIGMES YTGTGRGTGI GAVDNLGFAS NGDGGYIFTP NLNYADPNLI
KLGDPLGWGS PLGANTQDGF INKPQVEDEL TSLRLSAEYL FDEGAVKSVE FGVNRTDRDK
TKLDKGYYLT LKGYDGSANY LESVPSQYLL SPTSLAFFGM GDVLSYDSLA FYNDGNYTET
DVANVDLSRA TNSWAVYEEV TTAYVKANLE SEMFGLPVTG NVGLQAVMTD QNSDGTVATV
ENGKVIITPR NAGDSYTEWL PSMNLGFEVA DKQVVRLAAA RTLTRARMDK MNSNVNFSYN
ANPNDGVNWT GGAGNPELRP WLARQYDISY ENYFSDQGYF SVAVFYKDLE NFVFDQQALF
NFGAIFPNQP GNPIGTVTQP LNGQGGYVQG VEASLSLDFG QFADVLSGFG TILSGSYNDS
EVKETPDSDP TALPGLSEKT FNATVYYENE GFEARISSRY RSDFLGEVTK ISLQRENVNI
KAETVVDAQI GYDFSKSGID ALYGLSVQFQ VNNLTNEPFI SYTGDDQRFV RDYQNYGRNF
MLGANYKF
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