| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2028 |
|---|
| Symbol | |
|---|
| ID | 4018520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2404314 |
|---|
| End bp | 2405987 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637956053 |
|---|
| Product | alpha amylase, catalytic region |
|---|
| Protein accession | YP_563034 |
|---|
| Protein GI | 91793383 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAGT TAAGCTGGTG GCGTGGCGGA GTAATTTATC AGGTATACCC ACGTAGCCTC
ATGGACGCTA ACGACGATGG CATTGGCGAT CTTCAAGGCA TAATTCAAAA GCTGGATTAT
ATTGCAAGCC TTAATGTAGA TGCCATATGG ATCTCACCTT TTTTCAAGTC GCCAATGAAA
GATTTTGGTT ATGACATCAG TGATTATCGC GCCATAGACC CACTATTTGG CACCATGGAG
GATTTCGATA GCTTAATTGA AACTGCCCAT GGATTAGGCC TTAAAATAAT TATAGATCAG
GTGCTCAGTC ATACTTCTGA TGAACATGCC TGGTTCGAAC AGAGCCGTCA AAACCGGACT
AACGATAAAG CCGACTGGTA CGTGTGGGCT GATCCTAAAG AAGATGGCAC AGCCCCTAAT
AATTGGCTGG CAATTTTTGG AGGCTGCGCC TGGGAGTGGG AGCCAAGACG GCAACAATAC
TATTTGCATA ACTTCTTAAA GAGCCAACCC GATCTGAACT TTCATTGTGA GGCCGCGCGG
GAAGCGGTAT TGAGTAATGT AGAGTTTTGG CTTAAAAAAG GCGTCGATGG TTTCAGGCTA
GATGCCATTA CCTTCTGTTA TCACGATGAG CAATTGCGGG ATAATCCTGC TAAGCCCAAA
GATAAACGAC AAGGCCGCGG CTTCAGTGAA GACAACCCCT ATGCTTATCA ATATCACTAT
TACAACAATA CTCGGCCGCA AACCTTAAGC TTTATCGAGC AGCTGCGTGC CTTGATAGAC
AGATATCCAG GCACAGTCAC CTTAGGTGAA GTGTCATCGG AAGATTCATT AGCCACCATG
GCTGAATACA CTCGCGGTGA CAAGCGCTTG CACATGGCAT ACAGTTTTGA ATTGTTGACC
AAAGATTACA GCGCCGGGTA CATCCGTCAA ACCGTCGAAG AACTGGAAGT CAGCATAGGT
GACGGATGGC CTTGTTGGGC CATAGGCAAT CATGACGTTG AACGGGTGGC AAGCCGCTGG
AGTCAGGGCG AAGCTAAGCT TGGGCAAGTT AAAATGCTCA ATGCCATGTT GGGCTCCCTT
AGAGGCAGTA TTTGCAGCTA CCAAGGTGAG GAGCTGGGAT TAACCGAAGC AGATATCCCC
TTCGAGCAAC TGCAAGATCC TTTTGGATTA GCATTTTGGC CCATGTTCAA GGGCCGTGAT
GGTTGCCGCA CCCCTATGCC TTGGACAGAC ACTAAGACTG ACAGCGCAAC ACATTCAGGC
TTTAGCAAGG CAACACCTTG GCTTCCTGTG GCTGAGGCTC ATCTGCCCTT GGCGGTTGAA
AAACAAGAAG CTGACTCAGA CTCAGCGCTG CACAGTTATC GTCAATTTAT GCAGTGGCGC
AAGCAACAAG TGGCACTCCT TGATGGCAGT ATTGCATTTT TGGACATCAA AGCGCCTATG
CTTGCATTTG TGCGCCAGCA TCAGCAGCAG ACCTTGCTAG TCATGTTTAA TTTAAGCCCT
GAGCCGCAGT CAATATCTTT GGCGGAATTG ATGCTGGTTA ACCCACAACT TGCTGGCGTT
AAGGGAGTTA AATCCCAATC TGAGCATGGC CTTAGCATGG CGAAACAGGA TGAGACGGGG
CGAGAGCTAA CTTTTGAAGG TTTCGATGTA TTTTATGCTC AAGTCGAGTG CTAA
|
|---|
| Protein sequence | MGQLSWWRGG VIYQVYPRSL MDANDDGIGD LQGIIQKLDY IASLNVDAIW ISPFFKSPMK
DFGYDISDYR AIDPLFGTME DFDSLIETAH GLGLKIIIDQ VLSHTSDEHA WFEQSRQNRT
NDKADWYVWA DPKEDGTAPN NWLAIFGGCA WEWEPRRQQY YLHNFLKSQP DLNFHCEAAR
EAVLSNVEFW LKKGVDGFRL DAITFCYHDE QLRDNPAKPK DKRQGRGFSE DNPYAYQYHY
YNNTRPQTLS FIEQLRALID RYPGTVTLGE VSSEDSLATM AEYTRGDKRL HMAYSFELLT
KDYSAGYIRQ TVEELEVSIG DGWPCWAIGN HDVERVASRW SQGEAKLGQV KMLNAMLGSL
RGSICSYQGE ELGLTEADIP FEQLQDPFGL AFWPMFKGRD GCRTPMPWTD TKTDSATHSG
FSKATPWLPV AEAHLPLAVE KQEADSDSAL HSYRQFMQWR KQQVALLDGS IAFLDIKAPM
LAFVRQHQQQ TLLVMFNLSP EPQSISLAEL MLVNPQLAGV KGVKSQSEHG LSMAKQDETG
RELTFEGFDV FYAQVEC
|
|---|
| |