| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1999 |
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| Symbol | |
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| ID | 4018488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2367165 |
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| End bp | 2368043 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637956021 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563005 |
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| Protein GI | 91793354 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAACTTG AAATCATAAA ACAGCGGGCC CAGGCCTTCG ATTACCTGTT CGATGCCGTG
GTTGTCACCG ACATTGTCGG CACCATCATA GATTGGAACA AGGGATCGGA GCGGCTTTAT
GGTTATAGCA AAGCCGAAGT GCTCGGCAAA CCTGTGTGTA TCTTGCATGT ACCAGAAGAC
ACGGCGCATA TTACCGAACA GGTGATAGCC GCAGTAATGG CCGAGGGTAA GTGGTCCGGT
GAAGTTCGTA TGCTGCATAA GGATGGTCAT GTTGGCTGGA TAGAGTCCAT GTGCGTGCCC
ATTTTCGATG AAAACCAGCA AATGATCGGC GCCTTAGGCA TTAACCGAGA CATCAGCAGT
AGAATAGAAG AAGCCCAAAA ATTACAACAT CTTGCCTATC ATGATCACCT AACTCAAATT
TCCAATCGTT GCCTGTTAAT GGAAAAGCTA ACTCAGGCGC TCGCCAACGC CGAGCGTCAT
TCATTGTCAT TTTGCCTGTT ATTTATCGAC ATCAATGAGT TTAAAGCCAT CAATGACAGC
TATGGCCATG CCATTGGCGA TGCGGTATTG GTTGAATTTG CTAAAAGACT TAAGCAAGTT
ATCCGAGCCT CGGACACCCT AGCCCGTTTT GGTGGTGATG AGTTTGTGCT CTTGCTGGAA
CACACCTCAG CCATTACAGA CATAGAATCT ATCGCCGAAC AGTTATTTTC ACTCGTTAGT
CAGCCACTGC AAATAGACAA TATTTGTTTT CGCCTTAGCT GCAGCATAGG TACGGCCATT
TACCCTCAAG ATGGCACGAG TCTAGACACC TTATTAGCCT TTGCCGATAA AGCCATGTAT
AAAAACAAGT CAGCTCAATT AGCGACTAAA AAAGCGTAA
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| Protein sequence | MQLEIIKQRA QAFDYLFDAV VVTDIVGTII DWNKGSERLY GYSKAEVLGK PVCILHVPED
TAHITEQVIA AVMAEGKWSG EVRMLHKDGH VGWIESMCVP IFDENQQMIG ALGINRDISS
RIEEAQKLQH LAYHDHLTQI SNRCLLMEKL TQALANAERH SLSFCLLFID INEFKAINDS
YGHAIGDAVL VEFAKRLKQV IRASDTLARF GGDEFVLLLE HTSAITDIES IAEQLFSLVS
QPLQIDNICF RLSCSIGTAI YPQDGTSLDT LLAFADKAMY KNKSAQLATK KA
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