| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1996 |
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| Symbol | |
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| ID | 4018485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2361240 |
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| End bp | 2363807 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637956018 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_563002 |
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| Protein GI | 91793351 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.473093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATAT TGATTGTCGA GGACGACGAA AACTCACGGG TATTACAAGA TGTATATTTA
TCTGCCGATG GACACAGTGT CACTTCAGCC AAAGATGGGG AAATAGCTAT CTTGCAACTA
TTACAGCATA CCCCAGATAT GATAATTTCG GACATTCTCA TGCCAGTAAT GGATGGGTTT
GAGTTTTGCC GTTGGGTGAA AAATCATCCA CAATATAAGG ACATCCCTTT TGTTTTTTAT
ACTGCCACCT ACGTCGAATC GAAAGATGAA CAATTAGCGT ATGCGCTAGG CGCTCAGCTA
TTTCTAATTA AGCCACTGGA GCCATTAGAG TTTATAAAGC GCATTAAAGG AGTGGTAAAA
GATACATCAT TAGGAAAGCT TACACCTGTA AGTATTGATG AAAATGAAAG TATTACGCAG
CAGGAATATA TTAAATTTTA CAATTCTCGT ATTAGAAAAA AATTAGACAA AAAAACTTTG
GAACTGAACT CTGAACAGGA GGTTAGCCAG CAACATGAGA AAAATTATCA ACGTTTAGTG
GAGAGTTTAG ATGTTGGTGT ATTAGAGCTT GATCTAAAAT TATTTATTTT GAACGCAAAT
AAAGCATGGC ATAAACTACT GGGGGCAGCA CTGGTTAAAT TAGAGACTAA TATGAGTTTC
ACTCAGTTAT TCTCCACAGA GAATGCACTT ATTTTACAGA GTGAGTGCGC GAAAATTATT
GCTCAATCAC AATTTAATTC AACCCAAACC ATGCAGTTGA AAATGCTGGG GATAGAACAT
GACGTGCTAT GGCTGAATCT GAGGCTGTCC GCGGTTATGG AAAATAATCA CGTTATTGGT
TTTTCTGCGA TAATTTATAA TATTACAGCG AGTTTGATTG ACAGGCAAAA AATAGAGCGT
TATTCGAGTA TTTTTAACCA TACTTCTCAT GGGATCTTGG TATTGGATCA TAATGGAAAA
GTCGTCGAGG TTAATCCCGG GTTTCTAGCC TTGACTGGCC TGCCCATAGA GCCGTTCCTT
GGCCGAGATT TTACTAAATT AAATTCAATA AAATTTACCA AGGAACAAAG AGCGAGTTTA
CGCTTATATA TTAAGGCCGG TAAACCCTGG CAAGGTGAAG TAGTACATAT ACACTTAAAT
GGGATATCTA GAATTAGTCT GTTAAGTTTA TTTGTATTAC CTAGCCAAAT GGTTGAACTA
CAGCAATTAG TGTGTTTTTT TACCGATATA AGTGACATAA AATCTTATCA AGATCAATTG
CTGTATTTAA CACGTCACGA TAAAAATACC GGCCTTTACA ATCGACTTCA TTTTGTCACT
TTACTCGATT ATGAGTTAAA GCGTTGTGCA AGAGATGGTA GGCAGTTGGC TGTTTGTTTT
TTAGATGTTG ATAATTTTAA AGACATTAAT GACACGTTTG GTCACGCCAT TGGCGATGAG
TTTATTGCTC TGCTAGCAAC TAATCTTAAG AACAAGTTGC GACAAACGGA TGTGATAGCG
CGTTTTGGGG GAGATGAATT CATTATTTTC TTTGAAATAG AAGCCGAGCA GCAGAGTGCG
GAGCAATCTA TTACCAATAT TCGCCAATTA GTGTCTGGTG AATTTATTAC CAGCCAAGCG
GTGATCAACG CGTCAGTGTC TCTTGGAATA GCGATTTATC CCAATGACGG ACTCACTTCT
GCGGAATTAA TTAAAAATGC TGATACGGCA ATGTACCATG CAAAAAAACA GGGTGTAGGC
AGTTTCGCCT ATTATCGTCA AGCACTTACA GAACAAGTGG TACGACGTAT TTCGATCGTG
GAAGATATTA AACAGGCATT ACTGCTTAAT CAATTTGAAA TGTGGTATCA GCCTCAAATT
GATGTGATCA CCGAAGAAAT TTCTGGTGCC GAGGCGTTAA TTCGTTGGCA ACATCCAACG
AAGGGACTTA TCAATCCAAT AGATTTTATC CCTTTGGCAG AAGAATTAGG CCTCATAGCT
GAGGTCGACC GTTGGGTAAT GAACTCGGTA TTTAATCAAG TTTTTAAGTG GCATGAAAAA
AAGCTGTTTT TTGGTAGAGT GGCTTTAAAT GTATCAACCA AGACCTTCAA ACAATCAAAA
TTTAGACAAC ACTATGCTGA GGCTATTTCG CAATATCAGA TAGACCCCAG TCATATTGAA
ATAGAAATAA CTGAAGGTGC TTTTTCAGAT GAGGAGGATA TCTCACCTTT TCTGCAAGAA
TTACAGTCCC TAGGTTACGG GATTGCTATT GATGATTTCG GTACGGGTTA TTCATCCTTA
TCAAGACTCA GATCCATACC TGTTAATAGG CTGAAAATAG ACCGTAGTTT TATTGACCCT
ATAACAGACT CTCTCGCGGC TAAAGCCTTA GTGAAGTCCA TTATAAATTT GGCACATTCA
CTGGACTTAT GTGTCATTGC TGAAGGGATT GAAACCCAGC AGCATTTGAC CATATTGAAG
GAATTAGGCT GCAATCATAT GCAAGGCTAT TATATATCAC GGCCACTACC TGTAGCCTTG
TTTGAGATGT TTGTACAATC CTATTGCCCC AATCCCACTG GAACCTGA
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| Protein sequence | MNILIVEDDE NSRVLQDVYL SADGHSVTSA KDGEIAILQL LQHTPDMIIS DILMPVMDGF
EFCRWVKNHP QYKDIPFVFY TATYVESKDE QLAYALGAQL FLIKPLEPLE FIKRIKGVVK
DTSLGKLTPV SIDENESITQ QEYIKFYNSR IRKKLDKKTL ELNSEQEVSQ QHEKNYQRLV
ESLDVGVLEL DLKLFILNAN KAWHKLLGAA LVKLETNMSF TQLFSTENAL ILQSECAKII
AQSQFNSTQT MQLKMLGIEH DVLWLNLRLS AVMENNHVIG FSAIIYNITA SLIDRQKIER
YSSIFNHTSH GILVLDHNGK VVEVNPGFLA LTGLPIEPFL GRDFTKLNSI KFTKEQRASL
RLYIKAGKPW QGEVVHIHLN GISRISLLSL FVLPSQMVEL QQLVCFFTDI SDIKSYQDQL
LYLTRHDKNT GLYNRLHFVT LLDYELKRCA RDGRQLAVCF LDVDNFKDIN DTFGHAIGDE
FIALLATNLK NKLRQTDVIA RFGGDEFIIF FEIEAEQQSA EQSITNIRQL VSGEFITSQA
VINASVSLGI AIYPNDGLTS AELIKNADTA MYHAKKQGVG SFAYYRQALT EQVVRRISIV
EDIKQALLLN QFEMWYQPQI DVITEEISGA EALIRWQHPT KGLINPIDFI PLAEELGLIA
EVDRWVMNSV FNQVFKWHEK KLFFGRVALN VSTKTFKQSK FRQHYAEAIS QYQIDPSHIE
IEITEGAFSD EEDISPFLQE LQSLGYGIAI DDFGTGYSSL SRLRSIPVNR LKIDRSFIDP
ITDSLAAKAL VKSIINLAHS LDLCVIAEGI ETQQHLTILK ELGCNHMQGY YISRPLPVAL
FEMFVQSYCP NPTGT
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