Gene Sden_1956 details

Gene Information

• Locus tag: Sden_1956
• ID: 4018445
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2319124
• End bp: 2319726
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637955978
• Product: NUDIX hydrolase
• Protein accession: YP_562962
• Protein GI: 91793311
• COG category: [L] Replication, recombination and repair; [R] General function prediction only
• COG ID: [COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00026609
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAAAA ACGAATTTAG AACCCGTTAT AGTTTACACA GGCTTAGCGA TGTCATCCCC 
TCGGCGCCGG TAAAAATGCC CAGTCGTAAG GCCGCTGTTC TTATCCCATT AATTGAAAAA 
AATCAGCAAC TGCATATACT GCTCACTCAA AGACCGATGC ACCTACGCTC CCATCCTGGG 
CAAATCAGTT TTCCCGGAGG TAAGACAGAG CAAGGCGATA AAGACGATAT TGCCACAGCG 
TTAAGGGAAG CCCATGAAGA AATAGGGTTA GCCAGTAGCA ATGTTGAAGT GCTGGGGCAG 
TTTCCAACCC ATAAAACCTT CACCGGCTTT GATGTCACTC CCGTGGTTGG AATTATCGAA 
CGGCCATTTA AGCTAGTGAT TGACCCAGGT GAAGTACAAG ACTGTTTCAC TGTGCCATTG 
CAATACTTTA TTCAGCAGGA AAACCGTCAT CAGAAACGCT TTATGCGCAA TGGCAAGGAA 
TACACTGTGT ATCTTATGCC GTTCGAAGAC CGCTTTATTT GGGGGGTAAC GGCAGCCATC 
ATAGATTTGC TCTGCCGCCA TATCAGTCTA GATAACGTAG CGAATATACA AACCAGCCGC 
TAA 

 

Protein sequence

MDKNEFRTRY SLHRLSDVIP SAPVKMPSRK AAVLIPLIEK NQQLHILLTQ RPMHLRSHPG 
QISFPGGKTE QGDKDDIATA LREAHEEIGL ASSNVEVLGQ FPTHKTFTGF DVTPVVGIIE 
RPFKLVIDPG EVQDCFTVPL QYFIQQENRH QKRFMRNGKE YTVYLMPFED RFIWGVTAAI 
IDLLCRHISL DNVANIQTSR