| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1926 |
|---|
| Symbol | |
|---|
| ID | 4018415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2282376 |
|---|
| End bp | 2284124 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637955948 |
|---|
| Product | triple helix repeat-containing collagen |
|---|
| Protein accession | YP_562932 |
|---|
| Protein GI | 91793281 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA AAATAGCACT CGCTATGGGA TTAATAGTTG TGGGTATAAG CCCACCTCTA
TTTGCTGATA GCATGAAAAC TAGCTATTCG TTTAATCAAG CTAACGGTTA TCCGGGTAAT
GGTGAGCAAA ATAGCAATGG TAATAAAGGT TACTTCCCAT TATCGGGTAA TGGTCAGTTT
ATTACAGCAG GCCGTTCAGG GCTAGCGTTA GCCCAGGATG TGATGGTTGT TGGCGGATTA
GCCCCCTTTA ATAAAGATAC ACCGTTAACG GTTTCTTTAT GGATAAAGCC TACTCAAGAT
GCCGCTGGTG GCACCATTTT ATCCAGAAAA CACAGCGAAA ATGGCCAAGG CTTTAGCGTC
GCATTTGATT TTGATATGAA TCTGGAATTC ACACTCGTCG ATGAATTTGG CGGCTCAATT
TCAGTGGCCA CCTTAACCCC AGTGAATGTC GATCAAATGT GGCATCATGT TGCCGTTTCT
TATAAGGGTG ATGCGAATGC ATCGAATATG GCCCTATATA TCGATGGTCA AGTGACTGAA
TTAAAGCTGT CTTCAAATAG TTTGACCGGC CAAGTTGAGA CCTACCATCC CTTAGTCATA
GGTGGCAGCT CGTCATATAC CCAAGCACTC GCTGCAGAAA TCGATGAAGT GTATTTAGTG
CCTCAGAACT TTAATGCTGA GCAAGTGACG TGTCTTTATC AATTGAAAAC GGATTGTGCT
TACAGGCCAA CCACAGGCAA AGAGGGCCCT CGAGGCCCCA TAGGTGAGCT TGGGGAGCAG
GGTGATAGAG GTGCAACCGG AGTGAGCGGC CTAGCGGGCG ATGTGGGCCT CAAGGGTAAC
GCGGGTTTAC CAGGGCCAGT AGGCCCACAA GGTCCTAAAG GGCCTCAAGG TTTCACGGGA
CCTACTGGTT TAGCCGGAAT AGATGGCTCA GATGGTATTG ATGGCTCCGA TGGCACCAAT
GGTGCACCTG GTGCTCAAGG TGCTGTGGGT GATAGCGGCA TTCAAGGGCC ACAAGGTTCA
AAGGGATTGC AAGGAAACGT TGGGCCTAAA GGAGCTAGCG GAGATCGTGG TGCGCAAGGT
GCCATGGGTA ACCAAGGCGT TGCGGGCATC AAAGGCTCTC AAGGTGCGCA AGGACCCACC
GGTTATACCG GTGGTGCGGG TGCGGCAGGA CCTATTGGCA ATAAAGGGCC AACAGGACCT
ACTGGCAATG GAGGCTTGCA AGGTATTCCT GGAGGGCCGG GAGATAATGG ACCAAAGGGT
TACACAGGCC CCGCAGGAGA TAATATAGCA GGCTATCAGG GTGATAAAGG GGCAACTGGG
CCTGAAGGAC CACGTGGCAG GCAACCGAGT GAAAGTGAGT GTAGCGGTAG ATTTATGATG
GGTTCTCCAG AACCTTTACT TAAGTCTATG GCTTCTTTGA CACCTAATTT AGCTATGACT
GTTAAAGGAG AGGCGTTGTT AGAGGTCCAG CCTGAGTTAG ATGGTGTCAT TGATGCTGGG
TTTATTTTAT CAAAAGCTAT GTATACCAGC GAGACAGGCC TAGTACATAT TAATCTTAAT
GTGCTTGCCG TTGAGAATAA GCAGGAGGCC GACGGTTTCT TCTCGGCGTT AGATGCAAGC
GATCAAGCTG TGCACGATTT TATTGTAGAT ATATATACAC AGAAAAACTT AGATAATCGT
TATGCCGCCG AGATTAACAC CATATTAGCA ATGCCTTCTC CGCTTAAAAT TGAAAAAAGG
GCTCAATAA
|
|---|
| Protein sequence | MKNKIALAMG LIVVGISPPL FADSMKTSYS FNQANGYPGN GEQNSNGNKG YFPLSGNGQF
ITAGRSGLAL AQDVMVVGGL APFNKDTPLT VSLWIKPTQD AAGGTILSRK HSENGQGFSV
AFDFDMNLEF TLVDEFGGSI SVATLTPVNV DQMWHHVAVS YKGDANASNM ALYIDGQVTE
LKLSSNSLTG QVETYHPLVI GGSSSYTQAL AAEIDEVYLV PQNFNAEQVT CLYQLKTDCA
YRPTTGKEGP RGPIGELGEQ GDRGATGVSG LAGDVGLKGN AGLPGPVGPQ GPKGPQGFTG
PTGLAGIDGS DGIDGSDGTN GAPGAQGAVG DSGIQGPQGS KGLQGNVGPK GASGDRGAQG
AMGNQGVAGI KGSQGAQGPT GYTGGAGAAG PIGNKGPTGP TGNGGLQGIP GGPGDNGPKG
YTGPAGDNIA GYQGDKGATG PEGPRGRQPS ESECSGRFMM GSPEPLLKSM ASLTPNLAMT
VKGEALLEVQ PELDGVIDAG FILSKAMYTS ETGLVHINLN VLAVENKQEA DGFFSALDAS
DQAVHDFIVD IYTQKNLDNR YAAEINTILA MPSPLKIEKR AQ
|
|---|
| |