| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1924 |
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| Symbol | |
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| ID | 4018413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2279501 |
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| End bp | 2280901 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637955946 |
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| Product | triple helix repeat-containing collagen |
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| Protein accession | YP_562930 |
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| Protein GI | 91793279 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTTA AAACACTACT AATAGCCCCT GCATTGTGCA TGATGGTGAC AAGCGCCATC
GCCAGTGAAT TTGGCGCCTA TTACTCCTTC GAAGGCCAAG GCAATGGCTT TAAAGATATT
TCAAGCAATG ATAATAATGG CTACTTTCTA AACTCAGCCG AAGGCACTTA TACCATGAGT
GGCCGTAATG GCCTGGCATT AGAGAAGGAT GTATTGGTTG TGGGCACCAT GCCATCCCAT
AAGAAAGACA TGCCGATTAC CGTGTCCGCC TGGGTTCGTA CCTCAGAACT TCAAGGGGTA
CACCCGTTAG TGTCCAAGCT AGATGCCATC GGCAACCAGG GCTTTAGCAT CACGGTTTCC
CCCCAAGGAT TAACCTTCAG CTTAATGGAT CAGGCATTGG CGGGGATCAC GGTATCCACC
TCAGGGCTAC CGTCATTAAC AAGCTGGACC CATGTGGCAG TGACCTACAG TGGCAGTGGC
AAGGCCTCTG GCGTTAAAGT CTATGTGAAC GGTTTGGAGC AAACCACAAC CACGCTTGCT
GATAATTTGG CCTTGCAAAC CAATACCTTT GCCCCGCTTT ATATTGGCGG CTCTATCAGA
GAGCCGGCAC CGTTTCCCGG TGCAATCGAT GAAGTGTTAA TTGCCCCTAC GGCTTATTCA
ATTGGTCAAA TTGGCTGTTT GGCCACTTTT GGCAGTGATT GTGCTTCGGC CATCGGCCTA
GGCCCTCGTG GTGAGCAAGG GGCACAGGGA CCTAAAGGGC CTGCGGGCAT TATGGGAGAA
GCGGGTCCTC GCGGCTTACA AGGCGCAACG GGAGATCAAG GCGCCATGGG GCCAGCTGGA
GAAGCTGGCC CTCAAGGGCC CCGTGGGGAT ATTGGCCCGA TAGGCAACCA AGGTGTCAAA
GGCGCCAATG GTGCCAATGG CAGCGATGGT GTTAATGGCC TAGCCGGTGC TACTGGGGCG
AAAGGCCCTC AAGGCCGCGT GGGCGCGACT GGCCCACAGG GTGACATAGG CGCAACCGGC
CCTAGTGGTC CTAAAGGGGT GACAGGCCTA AGAGGGGAGC AAGGTGATAC TGGTCCTCGA
GGGGATGCTG GTGCTCAAGG CCCAGTCGGT GCACGAGGCA GCACGGGTGC TACCGGTGCG
AATGGCCGCA GAGGCATAGA TGGGGTTATA GGCGATCAAG GCAATCCTGG CGCGCAAGGT
AGTCCAGGGT CAAAAGGCGA TAACTCGACT GTAAGAGGTG ATACTGGAGC TAAGGGCTTA
GCGGCGACGG AGTTTTATTC TAGCGCAGAT CTGCATAGCT TGCGAACTCA ACTGAAAGGT
GATACTGGGG CTGTAGGACC GACAGGCCCG CAAGGCTTTG TGGGGCGATG CATCTGCTCA
GGCCGTCGCT GCAATCTTTA A
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| Protein sequence | MKLKTLLIAP ALCMMVTSAI ASEFGAYYSF EGQGNGFKDI SSNDNNGYFL NSAEGTYTMS
GRNGLALEKD VLVVGTMPSH KKDMPITVSA WVRTSELQGV HPLVSKLDAI GNQGFSITVS
PQGLTFSLMD QALAGITVST SGLPSLTSWT HVAVTYSGSG KASGVKVYVN GLEQTTTTLA
DNLALQTNTF APLYIGGSIR EPAPFPGAID EVLIAPTAYS IGQIGCLATF GSDCASAIGL
GPRGEQGAQG PKGPAGIMGE AGPRGLQGAT GDQGAMGPAG EAGPQGPRGD IGPIGNQGVK
GANGANGSDG VNGLAGATGA KGPQGRVGAT GPQGDIGATG PSGPKGVTGL RGEQGDTGPR
GDAGAQGPVG ARGSTGATGA NGRRGIDGVI GDQGNPGAQG SPGSKGDNST VRGDTGAKGL
AATEFYSSAD LHSLRTQLKG DTGAVGPTGP QGFVGRCICS GRRCNL
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