| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1899 |
|---|
| Symbol | |
|---|
| ID | 4018387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2229659 |
|---|
| End bp | 2230513 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637955920 |
|---|
| Product | phosphonate-binding periplasmic protein |
|---|
| Protein accession | YP_562905 |
|---|
| Protein GI | 91793254 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.681506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC GTCATTTCTT ATCAGCCTTG TGTTTAAGCT TAATTTCTCC TCTGGTCCTC
GGGGCCACTT TCACCTTTAC CGCGATTCCA GATGAAGACG AAAGCCAGCT TAGAACCCGC
TTTGACAAAG TAGCCGCCTA CTTAGAGAAA GAACTAGGCG TCGAGGTTAA ATATGTGCCG
GTAAAATCTT ACTCGGCAGC AGTGAGCGCT TTTCGCACTA ACCAAGTGCA ACTGGCCTGG
TTTGGTGGTT TATCTGGGGT GCAAGCGCGC CGTTTAGTCC CAGGCTCAGA GGCCATAGCC
CAAGGGTTTG AAGATCAATT CTTTAAAAGC TATATCATTG CCCATCATTC AACTGGGCTT
ACTGCCACTG AAAAGTTGGG TGAACTTAAT GGTTACACGT TAACTTTCGG ATCTAAAGAT
TCCACCTCTG GTCGGTTAAT GCCGCAATAT TTTCTTGAGC AAAGCACGCA GCAAAAGCTT
GATAAGGTAT TTAAACGCAT AGGCTTTTCT GGGGATCACA GCCGCACCAT TAGCCAGGTG
GAGGCGGGGG TTTATCAGTT AGGCGCAGTG AACTATAAAG TGTGGGATAC TGCCGTTGAG
CAAGCACAAG TCGATACCAG TAAGGTGAGC GTAATTTGGC AAAGCCCAAG CTACCCAGAT
TACCAGTGGA CCGTCAGAGC CGGAACTGAT GCCCAATTTG GTCAAGGCTT TAAGGCTAAA
CTGACCGCCG CACTACTGAA TATGCAAGAC AAAGCGTTAC TTGAGAGCTT CCCTAGAAAA
TCCTTCGTTG AGGCGAGCAA TAGTGATTAC CAACCCATTG AAGATGTCGC CATTGCCATT
GGATTGTTAG ATTAA
|
|---|
| Protein sequence | MKLRHFLSAL CLSLISPLVL GATFTFTAIP DEDESQLRTR FDKVAAYLEK ELGVEVKYVP
VKSYSAAVSA FRTNQVQLAW FGGLSGVQAR RLVPGSEAIA QGFEDQFFKS YIIAHHSTGL
TATEKLGELN GYTLTFGSKD STSGRLMPQY FLEQSTQQKL DKVFKRIGFS GDHSRTISQV
EAGVYQLGAV NYKVWDTAVE QAQVDTSKVS VIWQSPSYPD YQWTVRAGTD AQFGQGFKAK
LTAALLNMQD KALLESFPRK SFVEASNSDY QPIEDVAIAI GLLD
|
|---|
| |