Gene Sden_1866 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1866 
SymbolrnfD 
ID4018354 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp2194902 
End bp2195954 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content49% 
IMG OID637955887 
Productelectron transport complex protein RnfD 
Protein accessionYP_562872 
Protein GI91793221 
COG category[C] Energy production and conversion 
COG ID[COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 
TIGRFAM ID[TIGR01946] electron transport complex, RnfABCDGE type, D subunit 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTTA AAATCACCTC ATCACCCCAT GTGAGCCAAG GGATCCAAAC TGCCACTGTA 
ATGCGCCGCG TCGCCCTGTG CCTTATTCCT GGCATTCTAG TACAAACCTT GTTCTTTGGT
TTCGGTAGCC TAATTCAGCT CTGCCTTGCC ATCTTTACCG CTTATCTTGG CGAAGCCTTA
GTGCTTAAAG CGAGGGGACG GCCGATTTTA ATCACGCTCA AAGATAATTC TGCCTTAGTG
ACAGCCAGCT TATTGGCACT GTCCATACCG CCGCTGGCAC CTTGGTGGCT TGTGGTGATA
GGCAGTCTAT TTGCTATCAT CATAGTCAAA CATCTCTATG GCGGCCTTGG GCATAATCTG
TTTAATCCAG CCATGGCAGG CTATGTGGTA TTACTGGTGT CCTTCCCGCT GCAAATGACC
TCATGGGTCG CGCCTCAGGG CATAGCCCTT AACGGTGTTG ATGCCCTGGC CGCTATGAAG
GCTATTTTTG CTATTGGCCC AAGCTTAGGC AATGATTTTT ACCGTTTAGG GGTTGATGGC
ATAGCCATGG CCACGCCCTT AGATACCATA AAAACAGATC TGTCACTTGG GCTCACTACC
TTAGAAAGTT TTGCCAAACC CATCTTCGAT GGCAGCTATG GTGTTGGTTG GTTTTGGGTT
AACTTGGCCT ACCTAGCGGG TGGCCTTGTC TTGCTTAAGC TGAAAGTCAT TCGCTGGCAC
ATTAGTGTCG GCATCTTAGC GGCACTGTTT GTTTGTGCAA GCTTTGGCTT TTTGATTAGC
CCAGATACCC ATGTTAGCCC GCTGTTTCAC TGGTTTTCTG GTGGCACCAT GTTAGCCGTA
TTTTTTATCG CGACCGATCC AGTCACTGCC GCAACCAGTC CTAGAGGCCG GTTAATTTTT
GGTGCCAGCA TAGGCATTAT CATTTACCTT ATCCGCACCT ATGGAGGGTA CCCTGACGCC
GTCGCCTTTG CTGTGTTACT GGCAAATATG TGCGCGCCCT TTATCGATCA TTATGTACGT
CCCAGAACCT ATGGTCACAG GAGTGCGAAC TGA
 
Protein sequence
MAFKITSSPH VSQGIQTATV MRRVALCLIP GILVQTLFFG FGSLIQLCLA IFTAYLGEAL 
VLKARGRPIL ITLKDNSALV TASLLALSIP PLAPWWLVVI GSLFAIIIVK HLYGGLGHNL
FNPAMAGYVV LLVSFPLQMT SWVAPQGIAL NGVDALAAMK AIFAIGPSLG NDFYRLGVDG
IAMATPLDTI KTDLSLGLTT LESFAKPIFD GSYGVGWFWV NLAYLAGGLV LLKLKVIRWH
ISVGILAALF VCASFGFLIS PDTHVSPLFH WFSGGTMLAV FFIATDPVTA ATSPRGRLIF
GASIGIIIYL IRTYGGYPDA VAFAVLLANM CAPFIDHYVR PRTYGHRSAN