Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1866 |
Symbol | rnfD |
ID | 4018354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 2194902 |
End bp | 2195954 |
Gene Length | 1053 bp |
Protein Length | 350 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637955887 |
Product | electron transport complex protein RnfD |
Protein accession | YP_562872 |
Protein GI | 91793221 |
COG category | [C] Energy production and conversion |
COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCATTTA AAATCACCTC ATCACCCCAT GTGAGCCAAG GGATCCAAAC TGCCACTGTA ATGCGCCGCG TCGCCCTGTG CCTTATTCCT GGCATTCTAG TACAAACCTT GTTCTTTGGT TTCGGTAGCC TAATTCAGCT CTGCCTTGCC ATCTTTACCG CTTATCTTGG CGAAGCCTTA GTGCTTAAAG CGAGGGGACG GCCGATTTTA ATCACGCTCA AAGATAATTC TGCCTTAGTG ACAGCCAGCT TATTGGCACT GTCCATACCG CCGCTGGCAC CTTGGTGGCT TGTGGTGATA GGCAGTCTAT TTGCTATCAT CATAGTCAAA CATCTCTATG GCGGCCTTGG GCATAATCTG TTTAATCCAG CCATGGCAGG CTATGTGGTA TTACTGGTGT CCTTCCCGCT GCAAATGACC TCATGGGTCG CGCCTCAGGG CATAGCCCTT AACGGTGTTG ATGCCCTGGC CGCTATGAAG GCTATTTTTG CTATTGGCCC AAGCTTAGGC AATGATTTTT ACCGTTTAGG GGTTGATGGC ATAGCCATGG CCACGCCCTT AGATACCATA AAAACAGATC TGTCACTTGG GCTCACTACC TTAGAAAGTT TTGCCAAACC CATCTTCGAT GGCAGCTATG GTGTTGGTTG GTTTTGGGTT AACTTGGCCT ACCTAGCGGG TGGCCTTGTC TTGCTTAAGC TGAAAGTCAT TCGCTGGCAC ATTAGTGTCG GCATCTTAGC GGCACTGTTT GTTTGTGCAA GCTTTGGCTT TTTGATTAGC CCAGATACCC ATGTTAGCCC GCTGTTTCAC TGGTTTTCTG GTGGCACCAT GTTAGCCGTA TTTTTTATCG CGACCGATCC AGTCACTGCC GCAACCAGTC CTAGAGGCCG GTTAATTTTT GGTGCCAGCA TAGGCATTAT CATTTACCTT ATCCGCACCT ATGGAGGGTA CCCTGACGCC GTCGCCTTTG CTGTGTTACT GGCAAATATG TGCGCGCCCT TTATCGATCA TTATGTACGT CCCAGAACCT ATGGTCACAG GAGTGCGAAC TGA
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Protein sequence | MAFKITSSPH VSQGIQTATV MRRVALCLIP GILVQTLFFG FGSLIQLCLA IFTAYLGEAL VLKARGRPIL ITLKDNSALV TASLLALSIP PLAPWWLVVI GSLFAIIIVK HLYGGLGHNL FNPAMAGYVV LLVSFPLQMT SWVAPQGIAL NGVDALAAMK AIFAIGPSLG NDFYRLGVDG IAMATPLDTI KTDLSLGLTT LESFAKPIFD GSYGVGWFWV NLAYLAGGLV LLKLKVIRWH ISVGILAALF VCASFGFLIS PDTHVSPLFH WFSGGTMLAV FFIATDPVTA ATSPRGRLIF GASIGIIIYL IRTYGGYPDA VAFAVLLANM CAPFIDHYVR PRTYGHRSAN
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