| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1857 |
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| Symbol | |
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| ID | 4018340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2184322 |
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| End bp | 2185779 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955874 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_562864 |
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| Protein GI | 91793213 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGAGCAT CAATTCACTG TATCGCAGCC TGTGCAATCT TGCTTAGTGC TTGCCAAGCC
AGTAATCATA AAACTGGCTC CTCTCTAGGG TCTGCTAGCA GCAAGGGGGC AAAAGCCCCT
GTATCGTTAG ATCAAAAAGC CAGCAAAAGT GTGAATGGCA ATCCTCAAGA TGTGGTCTAT
GTGTGGGATC GTATTCGCCT TTCTATGGCC ATGCCGATTC CAAATCAAGC ATTGGTTAAT
CAATACCGAG ATTGGTTTAT TCGTCATCCC CAGCATCTGG AATTGATATC ACAACGAGCT
AGGCCCTTCT TATATTTAAT TGTAGAAGAG CTTGAAAAGC GTGATTTACC TATTGAGTTG
GCACTCTTGC CTATTGTAGA AAGCTCTTTT AATCCATTAG CGTATTCTAG CGCAGCAGCA
TCTGGACTTT GGCAATTTAC CTCTCCCATG GCAAGTCATT TTGGTCTCGA CATGAATTGG
TGGTATGACG GAAGACGCGA CGTACCTGCT GCAACCATTG CCGCGTTAGA TATGCTGGCG
TACTTATATA AAAAAACCGA TAACTGGTTA TATGCGTTAG CGGCCTACAA TTGCGGTGAA
GGTCGACTGC GTAATGCCAT TAGAGAAAAC GAATCACGTG GGCTTAGCAC TGATTTTTGG
TCACTCAATT TACCAAAAGA AACCAGACAA TACGTACCGC AACTCTTGGC ATTGGCCGAT
GTTGTTAAAA AGGCGGACGA ATACGGAATT AACCTCAATC AAATTCCCAA TCGACCTTTG
GTTGAAGTCA TAGATGTTGG CAGTCAAATT GATTTAGCCG TGGCTGCAGA GCTTGCGCAA
ATGCCCATTG AACGACTGCA AAAACTTAAT CCTGGATTTA ATCGCTGGAC AACCTCCCCA
GACGGGCCGC ACCAATTGAT CATACCCGTA GGTAAAGCCA ATGGCTTTAA ACAAGCACTA
GCAGAAACCA AAGTAAGCGA CAGAGTACAA TGGTTTAAAT ATAAGATCAG GGCAGGGGAC
AATATCAGTG CCATTGCTAA GCGTCATCAA ACCAGTACCT CGTTAATCCA ATCCATGAAT
GACATTCAAG GTGATAGGAT AATTGCGGGA AACTTCTTAT ATATGCCAAA TCCTGCGACT
CAAATGTCGG CGGCTTTGGT TTCACTTGCT AAAGATTCGG CAAGTCAGGA GGTAAAAGCG
GCTCCTGAGT TCATCAACAA TTCGCAGCAA ACTGACTTAA CCAAGGCGTT AGCTAGCAAG
TCTGTGCAGC AAAGCAAAAG TGCGGAAAAA ACCGTAAACC ATACCGTTAA GTACGGCGAT
ACACTGTGGA GCTTAGCAAG GGCCTACCAG GTGAGTGTTG AGCAGATTGT TAGCTGGAAT
AATATGACTG ACAAGGACAA ATTGAGCGAA GGAAAAACCC TAAAACTGCT CACCAATGTC
AGGCGATTTT CATCTTGA
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| Protein sequence | MRASIHCIAA CAILLSACQA SNHKTGSSLG SASSKGAKAP VSLDQKASKS VNGNPQDVVY
VWDRIRLSMA MPIPNQALVN QYRDWFIRHP QHLELISQRA RPFLYLIVEE LEKRDLPIEL
ALLPIVESSF NPLAYSSAAA SGLWQFTSPM ASHFGLDMNW WYDGRRDVPA ATIAALDMLA
YLYKKTDNWL YALAAYNCGE GRLRNAIREN ESRGLSTDFW SLNLPKETRQ YVPQLLALAD
VVKKADEYGI NLNQIPNRPL VEVIDVGSQI DLAVAAELAQ MPIERLQKLN PGFNRWTTSP
DGPHQLIIPV GKANGFKQAL AETKVSDRVQ WFKYKIRAGD NISAIAKRHQ TSTSLIQSMN
DIQGDRIIAG NFLYMPNPAT QMSAALVSLA KDSASQEVKA APEFINNSQQ TDLTKALASK
SVQQSKSAEK TVNHTVKYGD TLWSLARAYQ VSVEQIVSWN NMTDKDKLSE GKTLKLLTNV
RRFSS
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