Gene Sden_1838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1838 
Symbol 
ID4018321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp2164341 
End bp2164835 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content47% 
IMG OID637955855 
Product17 kDa surface antigen 
Protein accessionYP_562845 
Protein GI91793194 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3133] Outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.00000000536943 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGAAAC TCAGAAACTT AAGCTTTGTG TTAGCCGCTG TTATTTTGAC CAATGTACCG 
GTAGCGCACT GTCAAGCAAA CTATGATCGC ACCTACGATA GAAATCAAGC CGTGCCAGTG 
GAGAAGGTGA TGTATGGCAG CATCAGCTCT ATTCGCCATA TTACAGAAAA ACAACTTATT 
GAGGACAGTC ATAGCGGTTG GCGTACCTTC GGTGGTGCAC TGATTGGCGG CGTTATCGGC 
CATCAGTTTG GTGGTGGCCG CGGGCAAAAT GTCGCTACTG TGTTAGGGGC ATTATTGGGT 
GCGGGTGTCG GCAGCCGTTA TGGAGATGAA GCCTATTATC TTGAGCACAA ATTAATTGAG 
CTGATGATAA AGCAAGATGA TGGCAGTGAC ATTATGATCA TCCAGGATGT GGATCCTGCT 
ATGCCCTTTA TGGCAGGAGA CGAAGTGCGG GTGGTGTATT TTGCTGGCTA TGTGCGCATA 
GATAAGGCGA TGTAA
 
Protein sequence
MLKLRNLSFV LAAVILTNVP VAHCQANYDR TYDRNQAVPV EKVMYGSISS IRHITEKQLI 
EDSHSGWRTF GGALIGGVIG HQFGGGRGQN VATVLGALLG AGVGSRYGDE AYYLEHKLIE 
LMIKQDDGSD IMIIQDVDPA MPFMAGDEVR VVYFAGYVRI DKAM