| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1829 |
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| Symbol | |
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| ID | 4018312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 2154776 |
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| End bp | 2155810 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955846 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562836 |
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| Protein GI | 91793185 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGAAC ATAAACAAGA TCACAAAGTG ATTGAGAAAC TGCGTGCCGA TGTGCTGCGA
CTAGAAAGTC TTGAACAGCA AATTGATTCA TTACAACAAG AGCGAAACAA TCTCATTGAC
TCCAGTACCA AATTATCAAG TCGGTTAGAC GAGTACCGTC AGGGCATGGA AGAATGGGAA
TGGTTTTTCC GCAATTCCCT TGAAGGCCTT TGTATTGCAG GGCTAGATGG GTATTTTAAG
CGGGTAAATC CGGCCTTTGC AGCCATGCTG GGCTACAGCG TCGAAGAATT ACTGGCTAAA
CCATTTAGTT CTTTTATTCA CCCAGATGAT TTATCCAAAA CCGCCACCGA ACTCCATTCT
CTAGGATCAG GTGTTGACAG CATCAATTTT GAAAATCGTT ACCGCAATAA GCAGGGAGAA
TGGCGCTGGC TATCATGGCA TTGCCCTGGT GTTAAACAAA CCAGCAAACT GTATGCTATT
GCCCGTGATG TCACCGATAC TAAACAAGCC CAGGCTGATA TTCTCTATAA AGCGACTCAC
GACACGCTAA CTAAGCTGTA TAATCGCGCC GCGTTCGATG ATAATCTCGC TGACGCCATG
GCGCGAGCAA AGCGAAATAC CAGCAACTTA GTGATCATGT ATTTGATTGA CCTCGATGGT
TTCAAGACAG TGAACGATAC TCATGGTCAC CCCGTTGGCG ATCGGGTGTT GAAAGTGCTG
GCAAAACGTT TGCTTAATGC TCAACGGCAA GGGGAAATGG TATGTCGTCT AGGGGGGGAT
GAATTCGCTA TTTTGATAGA AGGCACTGGT GACACTCAAG TATCGCCTTT AGCAGAACGC
ATTTTATTAT CTATCAAGCA GCCAATCGAT GTGGAGGAGC TTCAATTAAG CATAGGGTGC
AGTATTGGTA TTTCAATATA CCCCAGCCTT GCAGCTAATT CTGATGAATT ATTTTCACAA
TCAGACAAAG CCATGTACAC CATTAAAAAT ACAGGGAAAA ATGGTTTTTG CTTATATAAA
AATCAACCTA ATTAA
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| Protein sequence | MAEHKQDHKV IEKLRADVLR LESLEQQIDS LQQERNNLID SSTKLSSRLD EYRQGMEEWE
WFFRNSLEGL CIAGLDGYFK RVNPAFAAML GYSVEELLAK PFSSFIHPDD LSKTATELHS
LGSGVDSINF ENRYRNKQGE WRWLSWHCPG VKQTSKLYAI ARDVTDTKQA QADILYKATH
DTLTKLYNRA AFDDNLADAM ARAKRNTSNL VIMYLIDLDG FKTVNDTHGH PVGDRVLKVL
AKRLLNAQRQ GEMVCRLGGD EFAILIEGTG DTQVSPLAER ILLSIKQPID VEELQLSIGC
SIGISIYPSL AANSDELFSQ SDKAMYTIKN TGKNGFCLYK NQPN
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