Gene Sden_1800 details

Gene Information

• Locus tag: Sden_1800
• ID: 4018282
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2127391
• End bp: 2129274
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637955816
• Product: alpha amylase, catalytic region
• Protein accession: YP_562807
• Protein GI: 91793156
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.847837
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGCTT CAAATACAAA AATAATAATC AAGAAACGCA CAAGCTTTAG GCTAACCTTC 
GCCCTCGTGG CGGGTTTGTC TGCCTTAGGG CTTAGCAGCA GTGCGAGCAG CGCCGAAAAC 
GGCGTCATGA TGCAGTATTT TCACTGGTAC ACCCCAGCCG ATGGCAAGCT TTGGACTCAA 
GTTCAACAAG AATCCAGCGC ACTAGCCGCG GCGGGATTCA CCGCATTATG GCTGCCGCCA 
GCCTACAAGG GCGCATCCGG CGCCTTAGAT GTGGGCTACG GTGTATACGA TATGTACGAC 
TTAGGCGAAT TTAATCAAAA AGGCGCTGTA CGGACAAAAT ACGGCACTAA ATCTCAGTAC 
GTCAGTGCCA TTAATACAGC CCACACACAG GGGCTGCAAG TGTATGGCGA TCTGGTGTTT 
AATCACAGAG GCGGCGCGGA TGCCACCGAA TCTGTCACGG CGGTGAGGGT GGCGCGGGAT 
AACCGTGATA GGGAATTTGG CGCCGATGTG CAAATCGATG CCTGGACACG ATTCGATTTT 
ACCGCTAGGC AAAATCAGCA TTCTGCATTT AAGTGGCGTT GGTATCATTT TGATGGGGTT 
GATTGGGCAC AGAACCTGAC TGAGAGTAAC ATTTTTAAGT TTCGCGGTAC GGGCAAGGGC 
TGGGACTGGG AAGTCGATAC AGAGAATGTT AATTATGACT ATCTGATGTA CGCCGATCTC 
GACTTTAATC ACCCAGAAGT GGTGCAAGAA TTAAAAGATT GGGGCGATTG GTATCTATCG 
CAAACTCAAG TGGATGGCTT TAGGCTGGAT GCCATAAAGC ATATTCGCTA TGAATTTTTT 
AATGATTGGC TCGATTATAT GCGCGCCAAT AGTGGTAAAA CCCTGTTTAC TGTGGGCGAA 
TTTTGGAGCT ATGACACAGC AAAACTGCAT AATTACATAA ACAAGACCTC GGGGCGTATG 
TCCTTGTTTG ATGCGCCATT GCATTTAAAC TTTCATCAAG CCTCAACCGC CAATGGCAAT 
TACGATATGC GCCGTATTTG GGATAACAGC TTGATGAAAG AGCAGCCCAA TTTAGCGGTA 
ACCTTAGTGG AAAACCATGA TACTCAAGCC TGTCAGGCGC TGGCTTCTCC AGTCAATGAT 
TGGTTCAAAC CTTTGGCCTA TGCCTTTATT CTGCTTCGAA GCCAAGGCTA CCCCAATGTG 
TTTTATGCCG ACTACTATGG CGCCAATTAC ACCAGCTCAG ACAATAGTTG CAATAATAGT 
GTGATAACTA TGGTGTCCCA TAAAACGAAA ATCGATCAAC TGCTAAAAGC CCGTAAAGAT 
TATGCCTATG GGCCGCAAAT TGATTATCTG GATCATTGGG ACATCATAGG TTGGACGCGT 
CTTGGCGATA CTAGCCACCC CAAGGCCATG GCGGTGATAA TGAGTGATGG CGCAAGCGGC 
ACTAAATGGA TGAATGTAAA TCGAACGTCA ACCCGTTTTA TGGATATTAC AGGCCATCGC 
AGTGAAACCG TGACGACTAA TGCCGATGGA TGGGGGCAAT TTCCGGTTAA TGGCGGCTCT 
TATTCCGTGT GGGTAGAGCA AGCAACATCA ACAAGCACAG TAGCTGTGAC CTTTAATTGC 
AATAATGGGG TGACCTATGC AGGCCAAGAT GTGTATGTAG TGGGTAATCA AGCCAATTTA 
GGCAATTGGA ATACGGCAGC AGCAATAAAA TTATCACCCA CAGGCTATCC CAGCTGGAGC 
GGGACAATCA ATCTACCCAT GAGTAAGGCT ATAGAGTGGA AATGCATTAA AAAATCCGCA 
ACAGAGGTGG TTTGGCAAGG TGGCGGCAAT AATACCTATA CCACGCCAAG TAGCGGTGTG 
GGTAGCACGA GTGCGAGTTT TTGA 

 

Protein sequence

MAASNTKIII KKRTSFRLTF ALVAGLSALG LSSSASSAEN GVMMQYFHWY TPADGKLWTQ 
VQQESSALAA AGFTALWLPP AYKGASGALD VGYGVYDMYD LGEFNQKGAV RTKYGTKSQY 
VSAINTAHTQ GLQVYGDLVF NHRGGADATE SVTAVRVARD NRDREFGADV QIDAWTRFDF 
TARQNQHSAF KWRWYHFDGV DWAQNLTESN IFKFRGTGKG WDWEVDTENV NYDYLMYADL 
DFNHPEVVQE LKDWGDWYLS QTQVDGFRLD AIKHIRYEFF NDWLDYMRAN SGKTLFTVGE 
FWSYDTAKLH NYINKTSGRM SLFDAPLHLN FHQASTANGN YDMRRIWDNS LMKEQPNLAV 
TLVENHDTQA CQALASPVND WFKPLAYAFI LLRSQGYPNV FYADYYGANY TSSDNSCNNS 
VITMVSHKTK IDQLLKARKD YAYGPQIDYL DHWDIIGWTR LGDTSHPKAM AVIMSDGASG 
TKWMNVNRTS TRFMDITGHR SETVTTNADG WGQFPVNGGS YSVWVEQATS TSTVAVTFNC 
NNGVTYAGQD VYVVGNQANL GNWNTAAAIK LSPTGYPSWS GTINLPMSKA IEWKCIKKSA 
TEVVWQGGGN NTYTTPSSGV GSTSASF