| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1786 |
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| Symbol | |
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| ID | 4018265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2110183 |
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| End bp | 2111361 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955799 |
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| Product | 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) |
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| Protein accession | YP_562793 |
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| Protein GI | 91793142 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00550974 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAG CACCGCTGAA CAACGAGACA GTGCACAGTG TCAGCTTCCT AGACAAAGCG
TCATTGCACA TTCCAATTTT GCGCATTTTA CAAGCCGATG GTACCACCTA TGAAAAGGCG
GTGTTACCTG TGATAGATAA AGCACTGGCC GAGAAAATGT ACGACACCTG TGTGTTTACC
CGAGTGTTAG ATGAGCGTAT GTTGGGTGCG CAGCGTCAGG GCCGGATAAG CTTCTATATG
ACTTGTACCG GTGAAGAGGC CGCTGTGATT GGTAGCGCCG CCGCTTTAGA TGATGAAGAT
GTGATCTTAG CTCAGTACCG TGAACATGCG GCGCTGCGTT ATCGCGGTTT CACCACTGAA
CAGTTTATGA ACCAGATGTT CAGCAACGAA AAAGATTTAG GCAAAGGTCG CCAAATGCCC
ATTCATTATG GCAGCAAGGC ACTTCATTAC CAGACAGTCT CGTCGCCTTT GGCGACTCAA
ATACCTCAGG CAACCGGTGT TGGTTACAGC CTTAAATTAC AGAAAAAACA CAATGTGGCT
ATCTGTTATT TTGGTGAAGG CGCCGCCTCG GAAGGGGACT TCCACGCCGG TATGAACATG
GCTGCAGTGT TAAAATCTCC TACCATTTTC TTCTGTCGAA ACAATGGCTA CGCTATCTCT
ACCCCTACGG AAGAGCAATA CGCAGGTAAT GGTATTGCCA GTCGTGGTGT GGGTTACGGC
ATGCACACTA TTCGTGTTGA CGGCAATGAT ATGTTAGCCG TATTGGCTGC GACTCAACAG
GCCCGTGCAT TTGCACTTGC CAATAACGCG CCAGTACTGA TTGAAGCCAT GACCTATCGT
TTAGGTGCGC ATTCATCGTC GGACGATCCA TCGGGTTACC GCTCAAAAGA AGAAGAAGCT
AAGTGGAAAC AACACGATCC TGTGCAGCGT TTTAAGTTGT GGATGATAAA CAAGGGTTGG
ATAAACGAGG CCGCCGACGT CAAGATGTAC GAAAAGTATC GCGAAGAAGT ACTCGCTGCG
GTGAAAGTTG CTGAAAAGAT CCCTGTACCA CATTTAGATG AAATCATTGA AGATGTGTAC
GACAAGCCAA CGCCTATCCT CAAGAAGCAA CTCGCTGAAC TTAAACAGCA TATTGCCAAG
TATCCAACGT CTTATCCTAA AAGTGCTGGG AGATTATAA
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| Protein sequence | MSKAPLNNET VHSVSFLDKA SLHIPILRIL QADGTTYEKA VLPVIDKALA EKMYDTCVFT
RVLDERMLGA QRQGRISFYM TCTGEEAAVI GSAAALDDED VILAQYREHA ALRYRGFTTE
QFMNQMFSNE KDLGKGRQMP IHYGSKALHY QTVSSPLATQ IPQATGVGYS LKLQKKHNVA
ICYFGEGAAS EGDFHAGMNM AAVLKSPTIF FCRNNGYAIS TPTEEQYAGN GIASRGVGYG
MHTIRVDGND MLAVLAATQQ ARAFALANNA PVLIEAMTYR LGAHSSSDDP SGYRSKEEEA
KWKQHDPVQR FKLWMINKGW INEAADVKMY EKYREEVLAA VKVAEKIPVP HLDEIIEDVY
DKPTPILKKQ LAELKQHIAK YPTSYPKSAG RL
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