Gene Sden_1782 details

Gene Information

• Locus tag: Sden_1782
• ID: 4018261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2105964
• End bp: 2107904
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637955795
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_562789
• Protein GI: 91793138
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATACAGA GCAGTTATCT ACCCCAGCTT AAGGCCCAGT TTGGTTTCGA TGCATTTCGT 
GATGGACAGC AGCAGGTCAT CGATTCCATC TTATCAAACA ACAGCGCATT GGCCATTTTC 
CCAACGGGTT CTGGCAAGTC TCTATGCTAT CAATTTTGCG CCCTGCAATT ACCCCATGTG 
ACCTTAGTGA TATCTCCTTT ACTGGCCTTG ATGAAAGATC AACTGGCGTT TCTACATGGT 
AAAGGCATAG CGGCAGCAAG CATAGACTCG AGTTTGACTG CGGCAGGATC CCGCCAAGTG 
ATGCAGGATA TACGACAAGG CAAAATAAAA ATCTTAATGG TGTCAGTAGA GCGGTTTAAT 
AACGAGCGTT TTCGCCATTT TCTGCAAGGA ATAGAGATTT CATTATTAGT GGTCGATGAA 
GCCCACTGTA TTTCTGAGTG GGGCCATAAT TTTAGACCCG ATTACTTAAA AATCCCTCAG 
TACTGTCAAG ACTTTGCTAT CGACAAGGTA CTATTGCTGA CAGCGACAGC AACCAGAAAA 
GTTAAGCAAG ATATGACTGA GCGTTTTGCG ATAGCAGAGA CTCATATCGT TCAGACAGGC 
TTTTATCGTG ACAACTTAGC ATTAACCGTG CTTAGCATCC CGCAAGCACA GAAAAATACT 
GAGTTAGTAA AGCAATTACA GGGATTGGCA GGTGCAGGGA TTGTTTACGT CACCTTGCAG 
CATACCGCTG ATGACATAGC CTATTTTTTA CAGCGCCAGG GTTTTAATGC TAAAGCCTAT 
CATGCGGGGA TGGATCAAGA AGTACGCCAA CAAGTTCAAC AGGACTTTAT GTCAGGTCTT 
GTGAACATCA TAGTTGCCAC TATTGCCTTT GGCATGGGCA TAGATAAAGG CGATATTCGC 
TTTGTTATCC ATTATGACTT ACCTAAATCC ATCGAAAATT ACAGTCAGGA GATTGGCCGT 
GCGGGGCGCG ACAACTTGCC TTCCCAATGC ATTACCCTTG CAAACCTTGA TGGCCTAAGT 
ACAGTAGAAA ATTTTGTTTA CGGTGATACC CCTGAAGCCG GCAGTATTAG GATCTTATTG 
CAGCATATGC AGAGCACACG GCAAGGTAAC CGCTGGGAAA TGCAAGAGTT AAGCTTGTCC 
AAGCTCACTA ACATACGTGT GCTCCCTCTA AAAACCTTAC TGGTGCAGTT AGAGCTACTT 
GGGCTGCTTA AACCCAGTCA TGCCTACTAT GCCGATTGCC GCTTTAAATT TATTAGTACA 
GAAGCTGAAG TGTTGGCCTT ATTCACCGAG GAGCGACGTG AGTTTCTCAA GCAAGTGTTT 
GCCCATACTC ATTTTAAAAA AGTGTGGGGC ACAGTGGATT TTGATGGCCT CTATCAAGCG 
TTCGGGCATG AAAGGCAAAG GGGGCTTAAA GCACTGGACT ATCTCAGTGA ACAGGGACAT 
ATTCAACTTG AGACTAAGCA ACTCACGCAA GTTTTTGAGC TTACAGTCAA TGAGATTGAT 
ATTGAGGCCT TAACATCACA ATTGCTTGGC TATTTTGAGG ATAAAGAAAC TAAAGAAATC 
GCCAGAATTG CACAGTTAAT TCGCTTTTTT GAATTAAACA CTTGCTTAAG CCACGCCTTG 
GCACGATATT TTGATGATAT GAACAGCCCA GCATACTGCA TGAATTGCAG TGTCTGTCTT 
GGAAAAAGTG TTCAGTTAAC CGCAAGCTCA ATTACACCTA TGCCACCCAA GGAGGTACTG 
GCTGCTCATT TAAAAGACTT GCAAATTTGG GCCGAGGGAC AAGGTTTTTC TCACGCCTTA 
TCTGTTAGTA TGCAGACTAA GTATTTGATG GGACTGAGCA TGCCTGCATT TAGCCGTAGT 
GGCATTACAA AACTTGCAGG TTTTGGTTTC TGTTCAGAGC AAGGCTTTCA TCAAGTTAGA 
TGTGCAATCA ATGACTTATA A 

 

Protein sequence

MIQSSYLPQL KAQFGFDAFR DGQQQVIDSI LSNNSALAIF PTGSGKSLCY QFCALQLPHV 
TLVISPLLAL MKDQLAFLHG KGIAAASIDS SLTAAGSRQV MQDIRQGKIK ILMVSVERFN 
NERFRHFLQG IEISLLVVDE AHCISEWGHN FRPDYLKIPQ YCQDFAIDKV LLLTATATRK 
VKQDMTERFA IAETHIVQTG FYRDNLALTV LSIPQAQKNT ELVKQLQGLA GAGIVYVTLQ 
HTADDIAYFL QRQGFNAKAY HAGMDQEVRQ QVQQDFMSGL VNIIVATIAF GMGIDKGDIR 
FVIHYDLPKS IENYSQEIGR AGRDNLPSQC ITLANLDGLS TVENFVYGDT PEAGSIRILL 
QHMQSTRQGN RWEMQELSLS KLTNIRVLPL KTLLVQLELL GLLKPSHAYY ADCRFKFIST 
EAEVLALFTE ERREFLKQVF AHTHFKKVWG TVDFDGLYQA FGHERQRGLK ALDYLSEQGH 
IQLETKQLTQ VFELTVNEID IEALTSQLLG YFEDKETKEI ARIAQLIRFF ELNTCLSHAL 
ARYFDDMNSP AYCMNCSVCL GKSVQLTASS ITPMPPKEVL AAHLKDLQIW AEGQGFSHAL 
SVSMQTKYLM GLSMPAFSRS GITKLAGFGF CSEQGFHQVR CAINDL