Gene Sden_1771 details

Gene Information

• Locus tag: Sden_1771
• ID: 4018250
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 2094296
• End bp: 2096137
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637955784
• Product: thiamine-phosphate pyrophosphorylase
• Protein accession: YP_562778
• Protein GI: 91793127
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; [COG0352] Thiamine monophosphate synthase
• TIGRFAM ID: [TIGR00097] phosphomethylpyrimidine kinase; [TIGR00693] thiamine-phosphate pyrophosphorylase

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATACAC CTCCAACAAT TGTCTGGACC ATAGCGGGCT CCGATAGCGG CGGTGGGGCG 
GGAATACAGG CTGATTTGGC AACGGCGCAG GACTTGGGGT GTCACTGCGC TACCGTTATC 
ACCACAGTGA CGGCACAAAA CTCTGTCTGC GTGAGTTTGG TTGAAGGCGT ATCAGCTGCC 
ATGTTGTTAG CTCAACTTAA TAGTCTCGCC CGTGATTTAC CGCCGGCAGC GATTAAAATT 
GGTTTATTGG CATCACAGCA GCAAGTCGAT GTGGTCGCTA ACTGGTTGAA GCGTTTGACT 
CAGCAACGCC GGTCTAAGGG TCAACTTGCG GTGATTTTAG ATCCCGTGAT GGTCGCCAGC 
AGTGGCGATA GGCTTAACCT AAATCCAAGT ATAAGTCCTT CTATAAGCTC TGGTATGAGC 
TCTAGTATGA GTTCAGGTAC TGGCTCTGGT TTTAACTCAG GTTCAGGCTT AGATTTTAGC 
GCCTTTATTG GGGTCGTTAG TTTAATCACT CCCAATCAAC AGGAACTGCA GTATCTAGTG 
TCAGGCCTGC AACTCAGCAA GACTGATAAT AGCCATAATC GTCACAGTCA AGGGATCGGC 
ACTTCAATCG AGAGTCAGGC AGATTTTATT GCTAAAACAG AAATGCTGGC TAACGCCTTT 
GGCTGTCATG TCTTAGCTAA AGGCGGGGAT GGCAAGCACT GGCAAGGCGA TGCAGCCATA 
GATTGTTATG TGTGTCATCA CGTTGAAGGC GCGAGCCTTC ATCATGATAA CGCCACTTAT 
TTACTATCAA GCTGCAGAGT GAATACGGGC AACAATCACG GCACGGGTTG CACACTATCA 
ATGGCCATCG CAAGTTTTAT GGCACAGGAC TTTGTACTCC ATGATGCCAT AGTGCTCGCT 
AAAGCCTATG TGACTCAAGG TTTGATCGAA AGCTATCAGC CAGGTTCAGG CCCTGGCACA 
CTGGCAAGAA CAGGCTGGCC TGATGACTTG GCTTTATTTC CTCAGATCTG GCCCGTGAAT 
GACGCTGACA TTAACGGTTC AATGAAGGCC AATTCTGACT CAATTGAACC TCCGCTGCCA 
AATTTAGGAC AATGTATAAG CTTACATTCA AAGGGATTTA AGCCAATAGA AAAAGATCTT 
GGGATCTACC CTGTGGTCGA TAGCTTAGCA CTACTTAAGA CTCTGCTTAA GGCCGGTTGC 
CGCACCATTC AGCTCAGGCT CAAAATTGAT AGCAAAGAAG CATTTGGGCT AAAAAAGCAG 
CAGTTAGAAC AGAAAATTAT CGATGCCATC GAGCTTGGAC GAACCTTTAA TGCGCAGGTG 
TTTATTAATG ATCACTGGCA GTTGGCACTG AGGCACAAAG CTTTTGGGCT GCACTTAGGG 
CAAGAAGACT TGTTCGAGGT GGACCTTAAG GCAATCAAAG CTGCAGGCAT GGCCCTTGGG 
CTATCGAGTC ACAGTTATTT TGAAATCCTG CTTTCCCACC AACTTAGGCC TTCATATATC 
GCCCTTGGGC ATATTTTTCC TACACCTACC AAAACCATGG CATCTAAACC TCAGGGACTT 
AAGAAGCTTA AGCATTATGC AAAGCTATTA AATAAGCATT ACCCCACAGT GGCCATTGGC 
GGTATAGATG AGACACGTCT AAAGGAGATA AAAGCCACTG GCGTGGCGAA TGTCGCAGTA 
GTGCGGGCAT TGACTAATGC AACAGATCCT ACGCTTGCTT TTGATAATCT AACTCGCCTC 
TGGAATGGCA ATAAGGCCGA GCAATATAAC GCTAAGCTTG AACTTGAGCA TAAAAAGGGG 
CACATGCAGG CTTCAGTGAC TGAGGTGAGT TATGCACCCT AA 

 

Protein sequence

MNTPPTIVWT IAGSDSGGGA GIQADLATAQ DLGCHCATVI TTVTAQNSVC VSLVEGVSAA 
MLLAQLNSLA RDLPPAAIKI GLLASQQQVD VVANWLKRLT QQRRSKGQLA VILDPVMVAS 
SGDRLNLNPS ISPSISSGMS SSMSSGTGSG FNSGSGLDFS AFIGVVSLIT PNQQELQYLV 
SGLQLSKTDN SHNRHSQGIG TSIESQADFI AKTEMLANAF GCHVLAKGGD GKHWQGDAAI 
DCYVCHHVEG ASLHHDNATY LLSSCRVNTG NNHGTGCTLS MAIASFMAQD FVLHDAIVLA 
KAYVTQGLIE SYQPGSGPGT LARTGWPDDL ALFPQIWPVN DADINGSMKA NSDSIEPPLP 
NLGQCISLHS KGFKPIEKDL GIYPVVDSLA LLKTLLKAGC RTIQLRLKID SKEAFGLKKQ 
QLEQKIIDAI ELGRTFNAQV FINDHWQLAL RHKAFGLHLG QEDLFEVDLK AIKAAGMALG 
LSSHSYFEIL LSHQLRPSYI ALGHIFPTPT KTMASKPQGL KKLKHYAKLL NKHYPTVAIG 
GIDETRLKEI KATGVANVAV VRALTNATDP TLAFDNLTRL WNGNKAEQYN AKLELEHKKG 
HMQASVTEVS YAP