Gene Sden_1756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1756 
Symbol 
ID4018234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp2077261 
End bp2078421 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content45% 
IMG OID637955769 
Producttetratricopeptide repeat protein 
Protein accessionYP_562763 
Protein GI91793112 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2956] Predicted N-acetylglucosaminyl transferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000020151 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAGAGA TCCTCTTTCT GCTATTACCC GTTGCAGCCG CCTATGGTTG GTACATGGGT 
AGGCGCAGTA TTCGCCAGAG CCAGCATCAA AAACAAAATA AGTTAAGCCG AGACTACTTC 
ACTGGGCTTA ATTTTCTGCT GTCTAATGAA TCTGATAAAG CCGTTGATTT GTTCATTACC 
ATGTTGGATG TGGACGATGA AACCATAGAT ACCCATTTGT CCTTAGGTTC GCTGTTTCGA 
AAGCGCGGTG AAGTTGACCG TTCAATACGT ATTCATCAAA ACTTAATTGC CCGTCCAAGT 
CTGACCACAG AACAACGTGA TATCGCCATG ATGGAGCTGG GCAAAGATTA TATGGCGGCA 
GGTTTTTATG ACAGAGCCGA AGAAATCTTT ACTAATTTAG TTAGCCAAGA TGAACACAGT 
GAAGAGGCTG AAACTCAGCT AATCTCCATC TACCAAATTA CCAAAGAATG GCAAAACGCC 
ATCGATACCA CTAAACGTTT AAGTCGCAAG CGGCAGCAAT GTTTAAAACC TATCACGGCG 
CATTTCTATT GCCAGTTAAG TGATGAAGCC ACTACAGAAG AACTGAAGGT AAAGAAACTG 
CTACAGGCGG TAAAATTAGA CCCCCAATGC GGCCGTGCCT GGTTAAGCCT AAGCAAAATA 
TATCTCGATA GCGGCAAACA AAGCGAATGT AAACAAAGTC TATACGCCTT ACTAGACGGC 
GATATTGAAT TGTTTGCCGA TGGTCTGAGC GTCGCCAAGC AAGTATACCG TGATAGCCAA 
GATGAAAGCG GATATCAACA ACTGCTGCTT AAAGCCATAG AGGCTGGGGC TGGTGTCAGT 
GTTGTCATCG CCCTGGCTGA ATTAAAGATA GCCCAACAGG ATATTGAAAG CGCCGAAACC 
TTGGTGCTGG ATAATCTCTA TCGCCATCCG ACCATGAAAG GCTTCCAGCA TTTAATGCAG 
GCGCATATAA AGCAGGCGGA AGACGGTCAG GCGAAGCAGA GTTTGACTAT GCTTGGGAAG 
TTAGTGGAAC AACAAATTAA ATATCGTCCT AGTTATCGCT GCCATGCCTG TGGTTTTCCT 
TCTCATGGAC TCTATTGGCA TTGTCCCTCC TGCAAGCAGT GGGGTAGCAT CAAGCGCATC 
AAAGGCCTTG ATGGTGAATG A
 
Protein sequence
MLEILFLLLP VAAAYGWYMG RRSIRQSQHQ KQNKLSRDYF TGLNFLLSNE SDKAVDLFIT 
MLDVDDETID THLSLGSLFR KRGEVDRSIR IHQNLIARPS LTTEQRDIAM MELGKDYMAA 
GFYDRAEEIF TNLVSQDEHS EEAETQLISI YQITKEWQNA IDTTKRLSRK RQQCLKPITA 
HFYCQLSDEA TTEELKVKKL LQAVKLDPQC GRAWLSLSKI YLDSGKQSEC KQSLYALLDG 
DIELFADGLS VAKQVYRDSQ DESGYQQLLL KAIEAGAGVS VVIALAELKI AQQDIESAET 
LVLDNLYRHP TMKGFQHLMQ AHIKQAEDGQ AKQSLTMLGK LVEQQIKYRP SYRCHACGFP 
SHGLYWHCPS CKQWGSIKRI KGLDGE