| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1740 |
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| Symbol | |
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| ID | 4018218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2057577 |
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| End bp | 2059868 |
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| Gene Length | 2292 bp |
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| Protein Length | 763 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955753 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562747 |
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| Protein GI | 91793096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0039101 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCAGTT ATTGCAGTGG AGAGGAAGCC GCATTGAAAT GCTCAAGTCG TAAACCCGAT
ATAGAAGGCT ACAGCAATAT TTTGTCGCTG GTGCTTGCTG GCGCTCCATT ACACGAGGTT
CTCACTGCAT TAGTATTATT AATTGAAGCG CAAAACTCAG GCACTAAAGC CTCGGTGTTA
TTACTCAGCA ATGATGGAAA ACGCCTGCTT AAAGGGGCGG CGCCTAATCT GCCCAAAGCG
TACAACGATG CCATTGATGG TGTGGAAATT GGCCCTGCGG TAGGTTCTTG TGGCACCGCG
GCCTACCTGC GTGAGCGTGT GATTGTTGAT GATATTGAAC ATCATCACTA TTGGGCTCAT
TACAAGGACC TTGCCCTGGG ATTTGGACTC AAAGCCTGCT GGTCTGAACC CATTTTTGAC
AGCCTTGGGG AAGTGCTGGG CACCTTCGCC ATGTATTATG ATGAGGTCAA ATCTCCAAGA
GCTGAAGATC TTGTGTTAAT CGAACAAGCT GCCCGTTTAG CAAGTCTTGC CATCGAGCGC
AACAAGAGCA CCCATCTTCA AAAACTCACC CATATGATTT TTAATCATCT GCCGATGGCG
CTATTGATCA CCAATGGCTC TGGCTCTATG TTGTTCTCAA ACAGAATGTT TAATGGGATC
ATAGAGGGAG AAGAACTGAA TCCACAAACC AAATTGCATT TAGTCGAGCA AGACACCAGC
CGAGTTTTTG AGCCTCACAA GTTTTTTGCC GCATCCCCCT CGGTGACATT GCAATCTTTA
TTGGACAATT TGAGTCACAA CTTAGCTTGG GATGGCGAGC TCTGCTGTGA GCGAGAAGAC
GGCCGTTTTA TTTATCTGGC GCTATCGGTA ACCCCATACC GAGATGTGTT TGGTCTGCAA
AACTGTTTTG CCTGGATCAT GATGGATGTG AGTGACAGTA AAAAAGCCAA TCATCTTATT
CAATATCAGG CTAACAATGA TGCACTCACA GGACTGAGCA ATCGCAAGCA TCTACTTGAA
AAAATAAAAA AGTATATCCA TGGCAAGCAG GAAGACAATC AGACATTGCC AGCTTTTAGT
TTATTGCAGA TAGATTTAGA TAATTTTAAG CAGATAAACG ATACCTTGGG CCATGATAAT
GGGGATGCGT TGTTAATCGC GGTAGCTGAT AGACTATCTC AAGCCTGTCC AAGTAAGGCC
TTGTTAGCAC GGTTAAACGG TGATGAATTT GCACTCTTGC TGCCCAATAA GCTTAATGCC
GAAGAACTCA GTGAGTTAGC CCAGAGTATC AATCAGTTAA TCAGCGAACG TTTCGTTATT
GATCAACAAG TGCTGTATAC CACGGTAAGC ATAGGTATTG CTCGCTACCC TGCAGATTCT
AACAGCGTCA GCGCGCTACT CAATTGTGCT AGCCAAGCCA TGTACAGTGC CAAAGAAAAA
GGCCGCAATG GTTTCCAGTT TTTCGATCAA CAAATGCAGC TCAAGGCAGA ACGCACCGCT
TACATTCACA CTCACATAAA AGCGGGGCTC GAAAATAATG AATTTGAGCT TTATTATCAA
CCCATAGTGA ATATCCGCAC CGCCACTATT CACAGGGCTG AAGTATTATT GCGTTGGCAC
CATGAAGGGG AATTTATTTC TCCTGATGAA TTTATTCCCG TGGCCGAGCA AACCGGATTT
ATCGTGCAAC TTGGCGAATG GGTGCGAAAA GAGGCCTTTA AAACCATAGA TTTATTTAGC
CAGAATCAAC TGTCTGTGGA CTTATCTGTC AATGTGTCCA CCATGGAATT CTGGTCTCCT
GAATTGCAAG CCAGATTTTT GGCTTCATTC GATGATACGG TACGAGAATT AGGCTTAGAC
TATTTTCCTT ACCATATGCT GACACTCGAG ATCACTGAGT CATTGATGAT GCAGCAGCAC
ACAAATATAG CCAACTTGCT GCAAACTTTG CGTAAACGTG GCATTAAAGT GTCTGTGGAT
GATTTTGGTA CCGGTTATTC CTCGCTTTCC TATCTGGTCA ATTTCCCTGT GGATCAGATT
AAAATTGATA AGGCATTTGT GCAAAAACTC ACGGATGGTC ACAGGCATAT CGCCATCGTT
GAAGCCATTG CCAGTCTGAG CCGCTCTTTG GATTTAACCG TCACAGCCGA AGGGGTGGAG
ACCAAAGAAC AGTTGGCGAT TATCAGTGGT AATCAAATTG ATATGGTGCA AGGTTACTAT
TTTTATCGAC CTATGCCTAA GCGGGAGTTT TTAAATTTGC TATTTGAACA AGCAGGTTAT
GGCTTACTTT AG
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| Protein sequence | MVSYCSGEEA ALKCSSRKPD IEGYSNILSL VLAGAPLHEV LTALVLLIEA QNSGTKASVL
LLSNDGKRLL KGAAPNLPKA YNDAIDGVEI GPAVGSCGTA AYLRERVIVD DIEHHHYWAH
YKDLALGFGL KACWSEPIFD SLGEVLGTFA MYYDEVKSPR AEDLVLIEQA ARLASLAIER
NKSTHLQKLT HMIFNHLPMA LLITNGSGSM LFSNRMFNGI IEGEELNPQT KLHLVEQDTS
RVFEPHKFFA ASPSVTLQSL LDNLSHNLAW DGELCCERED GRFIYLALSV TPYRDVFGLQ
NCFAWIMMDV SDSKKANHLI QYQANNDALT GLSNRKHLLE KIKKYIHGKQ EDNQTLPAFS
LLQIDLDNFK QINDTLGHDN GDALLIAVAD RLSQACPSKA LLARLNGDEF ALLLPNKLNA
EELSELAQSI NQLISERFVI DQQVLYTTVS IGIARYPADS NSVSALLNCA SQAMYSAKEK
GRNGFQFFDQ QMQLKAERTA YIHTHIKAGL ENNEFELYYQ PIVNIRTATI HRAEVLLRWH
HEGEFISPDE FIPVAEQTGF IVQLGEWVRK EAFKTIDLFS QNQLSVDLSV NVSTMEFWSP
ELQARFLASF DDTVRELGLD YFPYHMLTLE ITESLMMQQH TNIANLLQTL RKRGIKVSVD
DFGTGYSSLS YLVNFPVDQI KIDKAFVQKL TDGHRHIAIV EAIASLSRSL DLTVTAEGVE
TKEQLAIISG NQIDMVQGYY FYRPMPKREF LNLLFEQAGY GLL
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