| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1729 |
|---|
| Symbol | |
|---|
| ID | 4018207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 2038819 |
|---|
| End bp | 2043663 |
|---|
| Gene Length | 4845 bp |
|---|
| Protein Length | 1614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955742 |
|---|
| Product | NAD-glutamate dehydrogenase |
|---|
| Protein accession | YP_562736 |
|---|
| Protein GI | 91793085 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.752512 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTGA AAGATGCAAT GCCTTCAGTA CTACTCGAAA ATGTAGTGCA ATTAATTCAT
ACCAAAATCC CTAATTCACA AGTAACTCAA GTGGAGCAGT TCGCTAATTG CCTCTACGCT
CACATGTCCA AAGATGATTT AAACGCGCGT AATGACAGCG ATTTATATGG CGCTGTGGTG
AGTTTATGGA ATGCCCTAAA CCAAACGGCA GAACATGATA CCCATATCCG TGTGTTTAAC
CCAAGCCAGG CCAAGCACGG TTGGCAATCT ACTCACAGTA TTATCGAAAT TATCCAGCCG
GATATGCCTT TCCTTGTCGA TTCTGTGACT ATGGCGCTGA AGCGTTTGGG CGTAACAGCC
CATGTGATGT TGCATACGCC ACTGGCTGTT GTGAGGAAAA AAGATACCGT CACTCAAGTG
GGTTTCGTCA ATGATGCCCC CAAAGGTGCC GACACAGTCG CAGTGTTCCT GGTCGAAATT
GATAGACGCA GCAGTGATGC TGACATCAAA GCCATCGAAA AAGAACTGGC TTCAGTGTTG
GCAGATGTCG CAGCTTCAGT GAATGACTGG CAAAAAATGA CGGATACGCT CACTGACACC
ATAAAGCAGC TACCCAAACG TCCTTTCCCG GGTCAAAAAG CGGAAGTGGA TGAGGCGGTG
AGCTTCTTAA CGTATCTTAA TAATCATCAC TTTACCTTAC TGGGTTATCG CTATTATGAA
CTTAATCGCG TCGAAGGTGA TGTTGAGTTA GTACCTGACT TAAGCACTAG CCTAGGCTTG
ATGAATAAGA ATAAAACATC GCAGGTTGAG AAAGTCTTGA TGTTGTCTAG CTTCTCTGAG
TCTGCCCGCA AGCAAGCCTT AGATGAAACC TTATTGATCT TGACTAAGAG CTCGGCTAAG
AGCCGCGTGC ATCGCCCTGC CTATGTGGAC TATATAGGTA TCAAGCGTTT CGATAAAAAA
GGCAATGTGA TCGGCGAAGA CAGATTTATC GGTCTATACG CATCCAATCT ATACAACCGT
TCACCACGTG AAATCCCATT GTTGGCTGAA AAAGTTCAGC GTATCTTGGA CAGCTCAGGT
TTAGCACCGC GCTCTCACGA TTACAAAGCC TTAATGAACA TCTTGGAAAA CTTACCCCGA
GATGAGTTAA TTCAGGCAAA AGATAAAGAG TTGGCAAAAA TCGCCCACGG CGTATTAGAG
ATGCAAGACA GAGACAAACT TAAATTGTTT GTCAGAAAAG ACGGCTTTGG CCGCTTCCTG
TCCTGTTTAG TGTATGTCTC CAAAGAGCGT TACAACACTA AGCTTCGTCA AGATACTCAA
CGTATCCTGG CGCAGCATTT TAAGAGTATC GAAGAAGTAG AATTTACTAC CTATTTCTCC
GAGTCAACCT TGGCTCGTAC TCATTACATT ATCAAAGTTG ATAATAACAA TATGGATGTC
GATGTGGCCT CAATCGAGAA AAATCTATTC GAAGCAGCCC GCTCTTGGGA AGATAAACTC
AATACTTCGT TAAATACTCG TTTAGGTGAA CAAAAAGGCA CGGCCTTAAC TAAGCGTTAT
CTTCACTCTT TCTCTCCAAG CTACAAGGAA GATGTACTGC CAAGCTCTGC GGTTGTGGAT
CTTGAACACC TTGAAGCGCT AGATGATGAA CACAAGCTTG GCATGTTGTT TTATCAACCG
CAGGAAACGG CATTAAACGA CAACAAGGTG CGTTTAAAAC TGTTCCACAA GGATGAGCCT
ATTCATCTGT CTGATGTGTT ACCTATGCTG GAAAACTTTG GCCTGCGGGT AATTAACGAA
CGCCCTTATG AAGTAAAAAC CACTGACGGT GCCACGTTCT GGATTTTGGA CTTCTTAATG
ACAGTCCAAG GCGCGGCGAC GCAAAATATT TCAGACAGCC AAGACAGATT CCAAACGTCT
TTATCCCAAG TGTGGCAAAA GAAGCTTGAA GACGACGGCT TTAACCGTAT GGTCTTGTCT
ACTGGCTTAA GTGGCCGTGA AGTTTCCATC TTACGTGCCT ATGCTAAATA TATGCGTCAA
ATCGACGCGA CATTTAGTCA GTCATACATA GAAGAAACCT TTAGCCGCTA TCCAAAGCTT
GCCGAGCTAT TGGTGAAGAT GTTTATCCGT AAATTTAATC CAAAGCTGAA AACGCGCACC
TTAAGCAAGT TTTTAGAGCA GATTAATAAG CAGTTAGATG ATGTATCAAG TTTAGATGAC
GACAGGATCA TTCGTCGCTA TCTGGATCTG ATTAACGCGA CCTTAAGAAC CAACTTCTAT
CAGACTACGG AAACCGGTGA TTTTAAAGCC TCTATTTCGT TTAAGTTCTC ACCTCATCTT
ATTCCGGAAA TGCCTAAGCC ATTGCCTAAG TTTGAGATTT TTGTCTACTC ACCAAGAGTA
GAAGGTGTGC ATCTTCGTGG CGGTAAAGTG GCCCGCGGTG GTTTACGTTG GTCTGACAGA
CGCGAAGATT TCCGTACAGA AGTCTTAGGT CTGGTTAAGG CGCAGCAAGT TAAGAATACC
GTAATCGTAC CTGTGGGTGC CAAGGGCGGT TTCGTTTGTA AGCAGATGCC AATTGATGGC
AGTCGCGAAG CCATCTTCGC TGAAGGTCAA AACTGTTACC GTATCTTTAT TCGCGCCTTA
TTGGATATCA CAGACAATAT CGTTAACGGT CAAGTGGTGC CTCCAGTAGA TGTGGTTCGC
CACGATGAGG ATGACCCTTA TCTAGTGGTT GCCGCCGATA AAGGCACAGC GACATTCTCT
GATATCGCTA ACGCTATCGC CATCGAGTTT AACTTCTGGT TAGGCGATGC GTTCGCCTCA
GGTGGCAGTA ATGGTTACGA TCATAAGAAG ATGGGCATCA CAGCCAAAGG TGCGTGGGAG
TCAGTTAAAC GTCACTTCCG TGAAATCGGC ACAGATTGCC AAACCACAGA CTTTACTTGT
GTTGGCATAG GTGACATGGC GGGCGATGTA TTTGGTAACG GTATGCTGTT ATCTGAACAC
ATTAAGCTTG TAGCTGCCTT TAACCATATG CACATCTTCA TTGACCCAAC GCCAGATGTC
CCAGCCAGTT TTGCAGAACG TCAACGCTTG TTTGCATTAC CTCGCTCAAG CTGGGAAGAC
TACAACAGCA AGTTGATTTC TAAAGGCGGC GGCATTTTCT TGCGTTCAGC TAAGTCGATT
AAGCTCACTG CAGAAATGCA GCAGATGCTT GAAACTGACA AAGAAGCCAT GAACCCCACT
GAACTGATGA AAGCCCTGCT GAAAATGCCA GTGGATCTTA TTTGGAACGG CGGTATTGGT
ACTTATGTTA AAGCGACTCG TGAAACTCAT GCTGAAGTGG GCGATCGCGC TAACGATGCA
CTGCGAGTTA ATGGTAATGA GCTTAGGGCT AAGATTATTG GTGAAGGCGG TAACTTAGGT
TGTACCCAGT TAGGCCGTAT TGAATACGCG GCTAACGGCG GACGCATGAA TACTGACTTC
GTGGATAACG TAGGTGGTGT GGATTGCTCG GACAACGAAG TCAACATTAA GATTTTCTTA
AATACCTTAG TCGCCGAAGG TGAACTGACG GTTAAGCAGC GCAATACCTT GCTTGAAGAA
ATGACTGATG AAGTCGGTGA GATTGTACTG CAAGATTGTA AAGATCAGAC CCGTACTATC
TCGGTAACTC AAGTTCACGG TGCATCACAA CTCAAAGAGC ATATTCAGTT TATTCATCAT
CTTGAAAAAG AAGGTAAGCT AGATAGAGCA CTGGAGTTCT TGCCTACAGA AGAAGACTTA
ACTGAACGCT TAGCCAATGG CCGCCCATTA ACACGTCCTG AATTGTCCGT GTTAGTGGCT
TATGCCAAGA TGGTGCTAAA AGAGCAGTTA GTGACCCCAG AAATTACTGA AGACACTTTC
TTGAGTAAGC TACTTGTGGC GTATTTCCCG CAGAAATTGC AAAAGCGTTA TGCGTCTAAG
ATGACTCATC ATCCACTTCG CGGTGAAATT ATTGCGACTT CTTTAGCCAA TGAATTGGTT
AACGACATGG GCTTTAATTT CGTGCAGCGC ATGAAAGATG AAACTGGCGC GACGGTTGCT
GAAGCGGCGA TTTGCTACAC TATGGCCCGT GAAGTCTTTG GTCTTGCTGA GTTAACTAAA
TCAATCACAG ATCTCAATGG CATTGTCCCT GCTGTGGTTC AAGGTGAGAT GTTGCACCAG
TTACGCCGTA ATATGCGTCG TGCTTGTCGC TGGTTTATTC GTCATCGTAA CCGTTCGCAA
AACATTGAAC AGACAGTGGC CTTCTTTAGA CCTGTGTTTG AACAGCTCAA GCTTGATGTT
GATAAGTACA TGATTGAAGC GGAAGTGAAA GCCATCTCTG CTGAAATCAA CTCGTTAACG
AAAGAGAATG TGCCTAAGCC TGTCGCTCAA GTGATTGCTA AAATGAGCAC CTTGTTCTCA
GCCTTAGATA TCGCGCAAAT CGCCCAGCTT GAAAATAAGC CGTTAGAACT TGTGTCTGAG
ACTTACTTTA AATTAGGTGC GAAAGTGGAG CTGCATTGGT TCCTAGCACA GATCAGTGCT
CAACCTGTGG CAAACCATTG GCAAGCACTG GCTCGAGCGG CGTTCCGCGA AGAGCTAGAT
TGGCAGCAAC GAGCGTTAAG CTCTGTGGTA TTACGGACTT GTACCGATAC CTGTGATGCC
GATAGCGTGA TCAAGCAATG GATTGGGGCC AACCAGCCAT TATTGGCTCG CTGGTTCCAC
ATGCTGGCAG ACTTCAAGGT GTCTCAAAGC CATGAGTTTG CGAAGTTCTC AGTGGCACTT
CGAGAACTTA ACCTGCTTAT CCTTCATTGC GAAGCTGTGA AGTAG
|
|---|
| Protein sequence | MALKDAMPSV LLENVVQLIH TKIPNSQVTQ VEQFANCLYA HMSKDDLNAR NDSDLYGAVV
SLWNALNQTA EHDTHIRVFN PSQAKHGWQS THSIIEIIQP DMPFLVDSVT MALKRLGVTA
HVMLHTPLAV VRKKDTVTQV GFVNDAPKGA DTVAVFLVEI DRRSSDADIK AIEKELASVL
ADVAASVNDW QKMTDTLTDT IKQLPKRPFP GQKAEVDEAV SFLTYLNNHH FTLLGYRYYE
LNRVEGDVEL VPDLSTSLGL MNKNKTSQVE KVLMLSSFSE SARKQALDET LLILTKSSAK
SRVHRPAYVD YIGIKRFDKK GNVIGEDRFI GLYASNLYNR SPREIPLLAE KVQRILDSSG
LAPRSHDYKA LMNILENLPR DELIQAKDKE LAKIAHGVLE MQDRDKLKLF VRKDGFGRFL
SCLVYVSKER YNTKLRQDTQ RILAQHFKSI EEVEFTTYFS ESTLARTHYI IKVDNNNMDV
DVASIEKNLF EAARSWEDKL NTSLNTRLGE QKGTALTKRY LHSFSPSYKE DVLPSSAVVD
LEHLEALDDE HKLGMLFYQP QETALNDNKV RLKLFHKDEP IHLSDVLPML ENFGLRVINE
RPYEVKTTDG ATFWILDFLM TVQGAATQNI SDSQDRFQTS LSQVWQKKLE DDGFNRMVLS
TGLSGREVSI LRAYAKYMRQ IDATFSQSYI EETFSRYPKL AELLVKMFIR KFNPKLKTRT
LSKFLEQINK QLDDVSSLDD DRIIRRYLDL INATLRTNFY QTTETGDFKA SISFKFSPHL
IPEMPKPLPK FEIFVYSPRV EGVHLRGGKV ARGGLRWSDR REDFRTEVLG LVKAQQVKNT
VIVPVGAKGG FVCKQMPIDG SREAIFAEGQ NCYRIFIRAL LDITDNIVNG QVVPPVDVVR
HDEDDPYLVV AADKGTATFS DIANAIAIEF NFWLGDAFAS GGSNGYDHKK MGITAKGAWE
SVKRHFREIG TDCQTTDFTC VGIGDMAGDV FGNGMLLSEH IKLVAAFNHM HIFIDPTPDV
PASFAERQRL FALPRSSWED YNSKLISKGG GIFLRSAKSI KLTAEMQQML ETDKEAMNPT
ELMKALLKMP VDLIWNGGIG TYVKATRETH AEVGDRANDA LRVNGNELRA KIIGEGGNLG
CTQLGRIEYA ANGGRMNTDF VDNVGGVDCS DNEVNIKIFL NTLVAEGELT VKQRNTLLEE
MTDEVGEIVL QDCKDQTRTI SVTQVHGASQ LKEHIQFIHH LEKEGKLDRA LEFLPTEEDL
TERLANGRPL TRPELSVLVA YAKMVLKEQL VTPEITEDTF LSKLLVAYFP QKLQKRYASK
MTHHPLRGEI IATSLANELV NDMGFNFVQR MKDETGATVA EAAICYTMAR EVFGLAELTK
SITDLNGIVP AVVQGEMLHQ LRRNMRRACR WFIRHRNRSQ NIEQTVAFFR PVFEQLKLDV
DKYMIEAEVK AISAEINSLT KENVPKPVAQ VIAKMSTLFS ALDIAQIAQL ENKPLELVSE
TYFKLGAKVE LHWFLAQISA QPVANHWQAL ARAAFREELD WQQRALSSVV LRTCTDTCDA
DSVIKQWIGA NQPLLARWFH MLADFKVSQS HEFAKFSVAL RELNLLILHC EAVK
|
|---|
| |