Gene Sden_1717 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1717 
Symbol 
ID4018195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp2022921 
End bp2023562 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content46% 
IMG OID637955730 
Productparaquat-inducible protein A 
Protein accessionYP_562724 
Protein GI91793073 
COG category[S] Function unknown 
COG ID[COG2995] Uncharacterized paraquat-inducible protein A 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0000226813 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAATG ATCTACCCGC GACAAAATCG ACCTTAGGCT TGACCTTGGG CTTGTGTATT 
TGCACTGTGT GTAGAAAGCT TAACAAAACC AGTCAGACTC ACTGCCCCCG CTGCGATAGT 
CCCATCGTTG CCCGCAATAA GGCTAGTTTG CAACAAAGTT GGGCACTGCT GATCACCGCC 
GCCATTTTAT TGATCCCTGC CAATATTTAC CCTATTACCA CCTTAACCAA TCAGGGTAAG 
GTGACCCACG ACACTATTTT GAGCGGAATA ACACATTTAG TGCACCTTGA GCTTTACCCC 
ATAGCCGTCA TCGTCTTTAC CGCCAGTATT TTAGTGCCCT GGCTTAAAAT TTTTGGCTTA 
GGCGCTTACC TTTGCGCCAT TAGCTACAAT ATTCCCATTT CCAAACGCAA AATGATGGTG 
GGGTTCCACA TTATCGAATG GATTGGTCGC TGGTCCATGC TAGATTTATT TGTAATTTCG 
CTCACGGTTG CTTTAGTCAA TATGGGACAA CTCTTGGATG CCAAGCCTGC CCCTGCTGCC 
ACCGCCTTTG CACTGGTTAT TTTACTCACG CAGCTTGCTG CAAAAGTGTT AGACACTCGT 
TTACTCTGGG ATCGCTTGGA AACTCATAAT GACACACATT GA
 
Protein sequence
MDNDLPATKS TLGLTLGLCI CTVCRKLNKT SQTHCPRCDS PIVARNKASL QQSWALLITA 
AILLIPANIY PITTLTNQGK VTHDTILSGI THLVHLELYP IAVIVFTASI LVPWLKIFGL 
GAYLCAISYN IPISKRKMMV GFHIIEWIGR WSMLDLFVIS LTVALVNMGQ LLDAKPAPAA 
TAFALVILLT QLAAKVLDTR LLWDRLETHN DTH