| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1705 |
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| Symbol | |
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| ID | 4018183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 2006960 |
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| End bp | 2008888 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955718 |
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| Product | threonyl-tRNA synthetase |
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| Protein accession | YP_562712 |
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| Protein GI | 91793061 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0441] Threonyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0371819 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATTA TTACCTTGCC TGATGGCAGC AAACGCGAGT TTGTAAATCC AGTTTCTACC
TTAGATGTCG CTGCCGATAT TGGCCCAGGT CTTGCCAAAG CTTGTATAGC CGGTCGCGTA
AATGGCGAGC TTAAAGATGC TTGCGACCTT ATCAGCACAG ATTCGGATTT ATCTATCATC
ACGGCAAAAG ATCAAGAAGG TGTTGAAATC CTTCGTCACT CTTGCGCGCA TCTGCTAGGT
CACGCCGTTA AGCAAATGTG GCCAGAAGCC AAGATGGCTA TTGGTCCTGT TATCGATAAT
GGTTTCTACT ACGATATCGA TTTAGACCAC AAGCTGACAG CAGAAGACAT AGAAGCGCTG
GAGAAGCGCA TGATGGATTT AGCTAAGACC AACTATGACG TAGTAAAGCG CGTCGTATCT
TGGCATGAAG CTCGCGATGC CTTTAGTGAG CGCGGTGAAG TTTACAAAAT TGCTATTCTT
GATGAAAATA TCAGTAAAGA TGCGACTCCA GCACTTTATC ATCATGAAGA ATACACAGAC
ATGTGCCGTG GCCCTCACGT GCCTAATATG CGTTTTTGTC AGAATTTTAA GTTGATGAGT
GTCGCCGGCG CTTACTGGCG TGGTAATTCA GACAACAAGA TGCTGCAACG TGTTTACGGC
ACAGCTTGGG CTGATAAAAA AGCGTTAAAG ACGCATTTAA CCCGTCTTGA AGAAGCGGCA
AAGCGCGATC ACCGTAAAAT TGGCAAGCAG CTGGACCTTT ACCATATGCA AGAAGAAGCG
CCTGGCATGG TGTTCTGGCA TAACGATGGT TGGAGCTTGT TCCTGGAGCT TGAAAAGTTT
ATCCGCCAAA AGTTAGGTCA GTACACTTAC CAAGAAGTGA AAGGCCCATT GATGATGGAC
CGCGCTTTGT GGGAACGTTC TGGCCACTGG GATAAATACT CAGATGCCAT GTTCACTACA
AATAGTGAAA ATCGCGAATA CGCCATTAAA CCAATGAACT GTCCAGGCCA TGTGCAGATA
TTCAACCAAG GCCTTAAATC ATACCGTGAC TTACCGCTAC GTATGGCCGA GTTTGGTTGT
TGTCATCGTA ATGAGCCATC GGGTTCATTG CATGGTCTGA TGCGCGTGCG CGGCTTTACC
CAAGATGATG CGCATATTTT CTGTACCGAT GACCAAGTTC AAAAAGAAGT CAGCGATTGT
ATTCAAATGG TGTATGACAC CTATGCGACG TTCGGTTTTG AAAACATAGT GGTTAAGTTA
TCGACCCGTC CTGAAAAACG TATCGGTGAT GATGACATGT GGGACAGAGC CGAAGAAGCC
TTGAAGCAAG CACTTATTGC TAATGAGATT GAATTTGAAA TATTACCCGG CGAAGGTGCC
TTCTATGGCC CTAAAATTGA GTTCACCCTA CATGACTGTT TAGACAGAGC ATGGCAGTGC
GGCACAGTGC AATTAGACTA TGCATTGCCA AGCCGTTTAG GGGCAACTTA TGTGGCCGAA
GACAATACCC GTCAGACGCC TGTGATGATC CATAGAGCGA TTTTAGGCTC GTTAGAGCGT
TTCTTAGGGA TATTAATCGA AGAATACGCA GGTAAATTCC CAACTTGGCT CGCTCCAATG
CAAGTTGTTG TAATGAATAT TACCGACAAA CAGGCTGATT ATGTTCAAGA TGTTGTAAAA
ATCTTCAAAG AACAAGGCAT TCGTGCATCT TTTGACTTGA GGAATGAGAA AATAGGCTTT
AAAATACGGG AACACACACT CAGACGTGTA CCTTATTTAT TGGTCGTTGG TGATCAAGAA
ATGGAAAATA AGGAAGTGGC GGTTCGTACT CGTGATGGCA TCGATTTAGG CAAAATGAGC
ATTGAAGATT TTGCTAAAAA GATCCACAAA GATATTTCGA GCCGTAGTCT AAAATTGTTG
GAGGAATAG
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| Protein sequence | MPIITLPDGS KREFVNPVST LDVAADIGPG LAKACIAGRV NGELKDACDL ISTDSDLSII
TAKDQEGVEI LRHSCAHLLG HAVKQMWPEA KMAIGPVIDN GFYYDIDLDH KLTAEDIEAL
EKRMMDLAKT NYDVVKRVVS WHEARDAFSE RGEVYKIAIL DENISKDATP ALYHHEEYTD
MCRGPHVPNM RFCQNFKLMS VAGAYWRGNS DNKMLQRVYG TAWADKKALK THLTRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSLFLELEKF IRQKLGQYTY QEVKGPLMMD
RALWERSGHW DKYSDAMFTT NSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTD DQVQKEVSDC IQMVYDTYAT FGFENIVVKL
STRPEKRIGD DDMWDRAEEA LKQALIANEI EFEILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP SRLGATYVAE DNTRQTPVMI HRAILGSLER FLGILIEEYA GKFPTWLAPM
QVVVMNITDK QADYVQDVVK IFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENKEVAVRT RDGIDLGKMS IEDFAKKIHK DISSRSLKLL EE
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