| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1674 |
|---|
| Symbol | |
|---|
| ID | 4018150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1945274 |
|---|
| End bp | 1948813 |
|---|
| Gene Length | 3540 bp |
|---|
| Protein Length | 1179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637955685 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_562681 |
|---|
| Protein GI | 91793030 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000415877 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAT TTAGTGTATT CACTCCGCCT AGTGTTAAAA AAGGCCAACA AACCCAACGT
CTTGTAACCT TAGGTGGGCT TTCCCAATCC CTGAGCTTAG CGCAACTTAT TCTCGCCAAT
AAGGGCACTA GTCTTATCGT CACCCACGAT ACCCCTACGG CCATGCTGCT GGAAACGGAA
TTGCATTATC TACTTGCAAA TCATGATGTG AATCTGTGTT TATTCCCAGA CAGAGAAACC
TTGCCCTACG ACAGTTTCTC GCCCCATCAA GACTTGATTT CCCAGCGCCT TGAAACCTTA
GCGCAACTAG GTAACTTAGG TCACAACGCC GTTATCGTGC CGATTAATAC CTTAATGGTG
CGTTTACCCC CACAATCCTA TTTAAGTGCC AATGTCATGG TGCTCAAAAA AGGCGATACC
TACGCCCTGC AAACGGTAAG ACAGCACTTA GTGGATACGG GTTATCACTT AGTTGAACAG
GTCTATGAAC ATGGGGAGTT TGCCATTCGT GGCTCGATTT TAGATATCTT CCCTACTGGA
TGTCAGCAGC CACTGCGTAT TGAATTATTT GACGATGAAA TCGAATCCAT TCGCCATTTT
GATGTAGAAA CTCAGCGATC TGAGGTCGCC GTCGATGCCA TACGCATGTT ACCCGCTAAA
GAATTTGCCA CCGACAGCGC CGCCATCGAA GGCTTTAGGC AAAGATACCG TCGCCGTTTT
GAAGTGATTT CAAAAGAAGC TGAATCCGTT TATCAGTTGG TTAGCCGTAA CCTGATGCCT
GCTGGCATTG AAAATTATCT GCCACTATTT TTTGATGACA CGGCATCACT ATTTGATTAT
CTGCCTGAAA ACACTCAGTT GATCACCTTA GGTGACATAG ATAAAGCCTG TGCTAATCAT
TTAACTGAAA TCCATCATAG GTATGAAGAC AGGCGCGTCG ATCCATTAAG GCCACTACTT
GCGCCCCATG AGTTGTACCT GACCCAAGAG CAACTCTTCG CCGCATTCAA ACCCTATAAA
CGTAGCCAGT TTTTTATTCA CACCCCAGGC GATGCCCAAT TAGGTGAAGA TGGCACTAAA
AAAGACGTTG CTAAAAAAGA CAGTGCCTTA CAGGCCAACG TTGCTCCTCT GCCTGATATC
AATGCCAATC ATAAACTCAA GCAGCCCCTA GAAAGCCTGC AGGCCTTTGC TCAAGACGGC
AAGCCATTGT TATTTAGCGC AGAATCTGAG GGACGCCGCG AAGCCCTGTT GGCATTGCTG
TCAAAAATTG GCATCAAGCC GACACTCTTT AAGCATCTGG ATGAATTTTT AGACGCAAGC
GTTCCCCTTA AGGGGCCTGT GCATGGCTTG ATAGTCTCTC CCCTTTCTCG TGGCTGTACC
TTGTTAGACT CCCCCAAGGG AGAGTTAAGC CTAATTTGTG AAACCGAGCT ATTCGGCCAT
AAAATTGCTC AGCAGCGCCG CCGCGATAAA CAAAAACAAG TCAGCAGTGA TGCACTCATT
AAAGACTTGG CCGAACTTAA AGTCGGCCAG GCCATAGTGC ATTTAGAGCA CGGCGTCGCC
CTCTATCAAG GACTTGAAAC CTTAGACACT GGCGGGCTGG TGGCCGAGTA CTTAAAACTT
GAGTATGCCG GTGGCGATAA ACTGTATGTC CCTGTGTCAT CCTTGCATTT AATCAGTCGC
TATAACGCCA ATTCCGAAGA CAATGCCCAG CTTAATAAGC TCGGCAATGA AACTTGGGCT
AAGGCCAAGA AAAAAGCCAT AGAAAAAATT CGTGATGTGG CCGCTGAACT CTTGGATGTG
TACGCCAGAC GCCAGTCACG TCCAGGTGAA GCCCTAGCGA TAGATGCCGA TGAATACGCG
CAATTTGCCC AAGGTTTCCC CTATGAGGAA ACGGTCGATC AAGAATCGGC CATCATAGCC
GTATTGAATG ATATGCAGGC GCCAACCTCT ATGGACCGCC TCGTCTGTGG TGATGTGGGC
TTTGGTAAGA CAGAAGTCGC CATGCGCGCC GCCTTTGTGG CGGTTAATGC CGGTAAACAA
GTCGTGGTAC TCGTCCCCAC CACCTTGCTT GCCCAGCAGC ATTATGAAAA CTTTAAAGAC
AGGTTTGCCG ACTGGCCGGT AGAAATCGAA GTGATGTCAC GTTTTCGCAG CGCTAAAGAG
CAAGAGCAAG TGTTGCAATC CTTAAGTGAA GGCAAGGTGG ATATCGTCAT TGGTACCCAT
AAGCTACTGC AATCTGAGGC GAAATTTGTT GATTTAGGTT TATTGATCAT AGATGAAGAA
CACAGATTCG GAGTGCGGCA AAAAGAGAAA ATCAAAGCAC TCAGGGCCAA TGTCGATATC
TTAACCTTAA CTGCGACCCC AATTCCGCGC ACACTCAACA TGGCCATGTC CGGGATGCGC
GACTTATCCA TTATCGCCAC CCCGCCGGCG AAACGCTTGG CGGTTAAAAC CTTCGTGCGT
GAATACCATC AGGCGACCAT CAGGGAAGCA TTGCTGCGTG AAATCCTTCG CGGCGGACAA
GTGTATTACC TGCACAATAA TGTTGAAACC ATAGAAAAAT GCGCTCAAGA TCTACGGGAC
TTGTTGCCAG AGGCTCGAGT GGTTACCGGC CATGGGCAGA TGCGTGAACG GGACCTTGAA
AAAGTCATGG CGGATTTTTA TCATCAAAGA TTCAACGTGC TTGTCTGTAC TACCATTATT
GAAACAGGTA TCGACGTGCC AAGCGCCAAC ACTATCGTGA TTGATAGGGC CGATAAGTTT
GGTCTGGCGC AGCTGCATCA GCTGCGTGGC CGTGTAGGCC GCTCACATCA TCAAGCCTAT
GCCTATATGA TAACCCCGCC CATTAAGCTG ATTTCTACCG ATGCGCGCAA ACGTCTCGAA
GCCATCGATG CCTTAGAGGA ATTGGGCGCA GGCTTTATGC TGGCCACCCA AGATCTTGAA
ATTCGCGGCG CCGGTGAATT ATTAGGCGAT GAGCAAAGCG GTCACATCTC AAAAATTGGC
TTCAGCCTCT ATATGGAGAT GCTCGAATCG GCGGTCAGTG CCTTAAAAGA AGGCAAGGAG
CCGTCATTGG CTTATATGCT CAATGCCCAG TGTGAGGTGG ATTTACGCAT CCCCGCCTTA
CTACCTGAAG ATTATGTTAG CGATGTCAAT ATGCGCCTTT CCATGTATAA GCGCATTGCT
AACTGTAAGA GTGAGGCCAT GCTCGACGAG CTCAGAGTGG AATTTATCGA CCGCTTCGGC
TTACTGCCTG AGCCCACGAA AAACTTACTG GAATTGAGCC TATATAAGCA TCAAGCCACT
AAACTTGGCG CCACTAAGAT TGAAATGCAT GCCAAAGGCG GCAGCATAGA ATTTGGTGAC
AATCACAAAA TCGACCCCAT GTTCATCATA GGTTTATTGC AGAAACAGCC AAATATCTAT
CGAATGGAAG GACCAAATAA GCTAAGATTC GCCATTCCAG CAGAAAGTAG CAAACAACGC
CTCGAACTTG TGGCCACCTT GCTCGAACAA CTCGCTCAAC ACAGCATTGG AGAGAAATAG
|
|---|
| Protein sequence | MSQFSVFTPP SVKKGQQTQR LVTLGGLSQS LSLAQLILAN KGTSLIVTHD TPTAMLLETE
LHYLLANHDV NLCLFPDRET LPYDSFSPHQ DLISQRLETL AQLGNLGHNA VIVPINTLMV
RLPPQSYLSA NVMVLKKGDT YALQTVRQHL VDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
CQQPLRIELF DDEIESIRHF DVETQRSEVA VDAIRMLPAK EFATDSAAIE GFRQRYRRRF
EVISKEAESV YQLVSRNLMP AGIENYLPLF FDDTASLFDY LPENTQLITL GDIDKACANH
LTEIHHRYED RRVDPLRPLL APHELYLTQE QLFAAFKPYK RSQFFIHTPG DAQLGEDGTK
KDVAKKDSAL QANVAPLPDI NANHKLKQPL ESLQAFAQDG KPLLFSAESE GRREALLALL
SKIGIKPTLF KHLDEFLDAS VPLKGPVHGL IVSPLSRGCT LLDSPKGELS LICETELFGH
KIAQQRRRDK QKQVSSDALI KDLAELKVGQ AIVHLEHGVA LYQGLETLDT GGLVAEYLKL
EYAGGDKLYV PVSSLHLISR YNANSEDNAQ LNKLGNETWA KAKKKAIEKI RDVAAELLDV
YARRQSRPGE ALAIDADEYA QFAQGFPYEE TVDQESAIIA VLNDMQAPTS MDRLVCGDVG
FGKTEVAMRA AFVAVNAGKQ VVVLVPTTLL AQQHYENFKD RFADWPVEIE VMSRFRSAKE
QEQVLQSLSE GKVDIVIGTH KLLQSEAKFV DLGLLIIDEE HRFGVRQKEK IKALRANVDI
LTLTATPIPR TLNMAMSGMR DLSIIATPPA KRLAVKTFVR EYHQATIREA LLREILRGGQ
VYYLHNNVET IEKCAQDLRD LLPEARVVTG HGQMRERDLE KVMADFYHQR FNVLVCTTII
ETGIDVPSAN TIVIDRADKF GLAQLHQLRG RVGRSHHQAY AYMITPPIKL ISTDARKRLE
AIDALEELGA GFMLATQDLE IRGAGELLGD EQSGHISKIG FSLYMEMLES AVSALKEGKE
PSLAYMLNAQ CEVDLRIPAL LPEDYVSDVN MRLSMYKRIA NCKSEAMLDE LRVEFIDRFG
LLPEPTKNLL ELSLYKHQAT KLGATKIEMH AKGGSIEFGD NHKIDPMFII GLLQKQPNIY
RMEGPNKLRF AIPAESSKQR LELVATLLEQ LAQHSIGEK
|
|---|
| |