| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1662 |
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| Symbol | |
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| ID | 4018138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1930154 |
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| End bp | 1931755 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637955673 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562669 |
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| Protein GI | 91793018 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAC GTAAATTCTT TTTAATTTAT GCCATGAGTC TACTTGGGCT GTTGCTGGCA
TTTTTTTTGG CTTACCGCGC ATTAGTCGTT ATCCCAAAGA TGGACAAGCA ACAACTCATT
TGGCAACAAA GAGAAGTGGG TCTAGTTCAG CAAGCCTTTA TTAGTGAGTT TTCGCAGCTA
AAGACGATAA ACTATGACTA CAGTGTTTGG GATGAGAGCT ATCATTTTTT AGAGACGTTT
AATCAAGGCT TTATAGACAG TAATTTTTTG CCCGATACCT ACACTTCACT TAAAATCGAT
GCCAGCTATT TTTTTGACCC AAAGGGGCAA CTTATTTGGG GAAAAGCCAT GAATTGGCAG
ACACAAGCTG AGCTTGATTT CCCACAGGTG ATTATAGGTG CCCCTAAGAT TGCGGCTAAG
TTGATGGATA ATAACACTGC AGAGGGGAGC GTATCAGGTG TACTGAAAAG CGTGGAAGGG
GTGGTGCTGT TCAGCGTCAC TCGAGTGCGA AAATCTGATA AATCCGGTGA TAATATCGGC
TTTATGATGT TCTTAAGGAT CTTAAGGCCC GAAGCCTTAG CGCGATTAAG CGCTTTAACA
GGGATGAAAA TTGAGCATCA ACTATTTTTA GAAACCACTC TGGCAGCAGA AGATTTACTC
AATTTACAAG CCTTGACTGA ACTCAAGACA GAGCGAAAGT ATTTCTTGGG GGACGTGGAC
AATTCACCAG TACTGCTGTT AACCCTAGGT CACAGTGAAG ATGCCACTGA ATTTGCTCGA
GTATTCTTCT TCGATATGGC AAGCCTTATC ACAGTGTTAG CCCTGTTGAT TTTTCCCTTA
AGTTTACTGC TGTTAGTCAA TCACTTCTTG GTTAAACCTA TAGAATTTCA TACCCGTGAG
ACTCGACGTA TGTTGTCCAA TGAAGAACTC TATTGCATTA AATCAAGCTG TAAAATCAAT
GAACTGCACG ATTTACAAAA TGGCTTTAAT CAGTTGGTTG AAACCATAAA CCGACAACAA
AAAATTCTTT CGATACAAGC ATCAGAAGAT GTGCTTACAA AAGTGGCTAA CCGGCGTGCT
TTTGAGCAGT TTTATGATGT CAGTTGGCGG GCTATGCTGC GTCAGAAAAC CCCCTTGGCA
CTCTTGTTAT GTGATATCGA TCATTTTAAG TCTTATAACG ACCATTATGG CCATGCTGCA
GGCGACAAGG TAATAACTGC CGTAGCCGGT GCGTTAAAAA CCCGTTTTGG CCGAGCAACG
GATCTGGTTG CGCGCTACGG TGGGGAAGAG TTTGCTATCG TACTTACCCA TATCAGCCTA
GATGAATGTG AGCTTAATGC TCAAGCGGCC ATACAGCAGA TCAATGCCTT AGACATAGCT
CATGGTTTTT CCCCTGTCAG TGAAAAAGTG ACCATAAGTA TTGGCATGAC CATCATAGAT
CCTAACCAAA CTGACCTAGA TGACATTGAT CCATTGTCGC TTTTTCTGCA GACAGATAGG
GCGTTATACA AAGCGAAAAA ATTGGGCCGT AATCGCTATC TAGTACGAGA GTTTGAAGCC
GAATCCTTAA GCCCTCAAGA TGAATTTCTC GCCAGAATGT AA
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| Protein sequence | MNLRKFFLIY AMSLLGLLLA FFLAYRALVV IPKMDKQQLI WQQREVGLVQ QAFISEFSQL
KTINYDYSVW DESYHFLETF NQGFIDSNFL PDTYTSLKID ASYFFDPKGQ LIWGKAMNWQ
TQAELDFPQV IIGAPKIAAK LMDNNTAEGS VSGVLKSVEG VVLFSVTRVR KSDKSGDNIG
FMMFLRILRP EALARLSALT GMKIEHQLFL ETTLAAEDLL NLQALTELKT ERKYFLGDVD
NSPVLLLTLG HSEDATEFAR VFFFDMASLI TVLALLIFPL SLLLLVNHFL VKPIEFHTRE
TRRMLSNEEL YCIKSSCKIN ELHDLQNGFN QLVETINRQQ KILSIQASED VLTKVANRRA
FEQFYDVSWR AMLRQKTPLA LLLCDIDHFK SYNDHYGHAA GDKVITAVAG ALKTRFGRAT
DLVARYGGEE FAIVLTHISL DECELNAQAA IQQINALDIA HGFSPVSEKV TISIGMTIID
PNQTDLDDID PLSLFLQTDR ALYKAKKLGR NRYLVREFEA ESLSPQDEFL ARM
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