Gene Sden_1643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1643 
Symbol 
ID4018118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1907992 
End bp1908702 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content47% 
IMG OID637955653 
ProductDNA replication initiation factor 
Protein accessionYP_562650 
Protein GI91792999 
COG category[L] Replication, recombination and repair 
COG ID[COG0593] ATPase involved in DNA replication initiation 
TIGRFAM ID[TIGR03420] DnaA regulatory inactivator Hda 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.112989 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCCAAA ACTCACCGAG ACAGTTATCT TTACCCGTCT ATTTACCTGA CGATGAAACT 
TTTCAGAGTT ATTACCCGGC CTCGGGTAAT GATGAACTGA TCCAAAAGTT GCAAGCCAGT
GCGCAAGGGG GATTAAGTTC TTCCTTGTAT ATTTACGGAC CGGTAAAGTC CGGCCGCACG
CATCTGATGC ACGCCGCCTG TGCGTTAGCG AACGATAAAG ACAGGCGTAC CTTGTATATT
CCCCTCGGGA TCCACGCCAG TATTTCACCG GCGTTATTCG AAGGCTTAGA ATCCCTTGAG
CTTATCTGTA TCGATGATAT TGATGCCATC GCAGGTCACC CCATTTGGGA AGAGGCGATA
TTTCATCTCT ATAATCGCAT TGCTGAGCAC AAAGATTGTC ATTTGATTGT CAGTGGTAAA
GCCTCGCCAA CGGAAGCGGG TTTTTTATTA CCTGACTTAG TGTCACGGAT GCAGTGGGGG
TTAATTTATC AACTCCAACC TATGGCAGAT GATGAGAAGT TACTGGCATT GCAGCGCCGT
GCTGCCATGC GGGGGTTACA GCTTTCAGAT GAGGTAGGGC GCTTTTTATT GACTCGAATG
GCACGAGACC TGCGTACCTT ATTTGATGTG CTCGATAAGC TAGATAAAGC CTCAATGGTG
CATCAGCGTA AGCTGACCAT ACCCTTTATT AAAGAAATGC TTAGGTTGTA G
 
Protein sequence
MTQNSPRQLS LPVYLPDDET FQSYYPASGN DELIQKLQAS AQGGLSSSLY IYGPVKSGRT 
HLMHAACALA NDKDRRTLYI PLGIHASISP ALFEGLESLE LICIDDIDAI AGHPIWEEAI
FHLYNRIAEH KDCHLIVSGK ASPTEAGFLL PDLVSRMQWG LIYQLQPMAD DEKLLALQRR
AAMRGLQLSD EVGRFLLTRM ARDLRTLFDV LDKLDKASMV HQRKLTIPFI KEMLRL