| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1634 |
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| Symbol | nhaB |
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| ID | 4018109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1896237 |
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| End bp | 1897823 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637955644 |
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| Product | sodium/proton antiporter |
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| Protein accession | YP_562641 |
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| Protein GI | 91792990 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3067] Na+/H+ antiporter |
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| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000378867 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGCGA ACAAAATTGA TGCGTTATTT GTTAACTTTT TAGGAAATTC TCCCAAATGG
TACAAACTCG CTATTTTGTC ATTTCTAGTC ATTAACCCAT TAATATTTTT CTTCATTAAC
CCCTTCGTCG CTGGTTGGGT ATTGGTCCTA GAATTTATTT TCACCTTAGC CATGGCACTT
AAATGTTACC CGTTACAACC CGGTGGTTTG CTAGCCATTC AAGCTGTGGC TATCGGCATG
ACCTCCCCAT CTCAGGTATT GCATGAAATC CAAGCCAATT TAGAAGTGTT ATTACTGCTT
ATCTTTATGG TGGCAGGCAT CTACTTCATG AAGCAGCTAC TCCTTTTTGT GTTTACTAAG
ATGATCACTA AGGTACGCTC TAAAACCTAT TTATCATTAC TGTTTTGCGT CGCAGCGGCC
TTCTTATCAG CATTCCTCGA TGCATTGACT GTCATCGCGG TCATTATCGC TGTAGGCATA
GGTTTCTACT CGATTTATCA TAAGGTGGCA TCCGGCAAAG ACTTTAGTTC AGATCACGAC
CATACCTCTG AGTCCCATGA TCAACTCAAC GCCGATGATT TAGAATCCTT TCGTGGCTTT
CTGCGTAACC TGCTAATGCA TGCCGGTGTC GGTACCGCCC TTGGCGGTGT TTGTACCATG
GTAGGTGAAC CACAGAACTT AATCATTGCA GCCCAAGCCC ATTGGCAATT CGGTGAATTC
TTTATCCGAA TGTCACCTGT GACCATACCT GTGCTTTTGT CTGGCTTATT GACCTGTGTG
GTAGTCGAGA AATTAAAATG GTTCACCTAT GGCGTACAAC TACCAGAAAA CGTCCATAAA
ATATTAAGCG ATTACGATGC CTATGAAGAT ACGCATCGTA GTGACCGCGA TAAAGTGAAG
TTAATTATTC AAGCCTTGGT GGGTGTCTGG TTAGTTGCAG GACTCGCATT ACACTTAGCT
TCTGTGGGTT TAATTGGTTT ATCCGTCATT ATTTTAACCA CAGCCTTTAA CGGCATTACC
GATGAACATT CTTTGGGTAA AGCCTTCGAA GAAGCACTGC CTTTCACTGC GTTACTTGCA
GTATTTTTTG CGATCGTCGG CGTTATCATA GATCAAAGAC TATTTGCCCC TGTCATTCAA
TGGGCGCTAA CCTTCGAGGG CAATGCACAG CTCGTGGTCT TTTTCATCGC TAACGGGGTA
TTGTCTATGG TCAGTGACAA CGTCTTTGTC GGTACCGTTT ACATTAATGA AGTGAAAAGT
GCTTTGCTTA GTGGTCAAAT TACCCGAGAT CAATTCGACT TATTAGCTGT GGCTATCAAT
ACGGGCACCA ACTTACCATC AGTTGCCACG CCCAATGGCC AAGCCGCCTT CTTGTTCCTA
TTGACCTCAG CTTTAGCCCC ACTCATTCGC CTGTCTTATG GTCGAATGGT TATCATGGCA
CTGCCTTACA CCCTAGTTTT GTCGATTGTC GGCATAGTGA CTATCGAGTC AGGCTTCTTG
GTGGAAATGA CGCAGTATTT TTATGATAAC AACATCATCA TGCATCATTC AGCCAAAGAA
TTGACTGAAA GCGTGGTCGG ACATTAA
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| Protein sequence | MPANKIDALF VNFLGNSPKW YKLAILSFLV INPLIFFFIN PFVAGWVLVL EFIFTLAMAL
KCYPLQPGGL LAIQAVAIGM TSPSQVLHEI QANLEVLLLL IFMVAGIYFM KQLLLFVFTK
MITKVRSKTY LSLLFCVAAA FLSAFLDALT VIAVIIAVGI GFYSIYHKVA SGKDFSSDHD
HTSESHDQLN ADDLESFRGF LRNLLMHAGV GTALGGVCTM VGEPQNLIIA AQAHWQFGEF
FIRMSPVTIP VLLSGLLTCV VVEKLKWFTY GVQLPENVHK ILSDYDAYED THRSDRDKVK
LIIQALVGVW LVAGLALHLA SVGLIGLSVI ILTTAFNGIT DEHSLGKAFE EALPFTALLA
VFFAIVGVII DQRLFAPVIQ WALTFEGNAQ LVVFFIANGV LSMVSDNVFV GTVYINEVKS
ALLSGQITRD QFDLLAVAIN TGTNLPSVAT PNGQAAFLFL LTSALAPLIR LSYGRMVIMA
LPYTLVLSIV GIVTIESGFL VEMTQYFYDN NIIMHHSAKE LTESVVGH
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