| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1596 |
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| Symbol | cpdB |
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| ID | 4018071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1854602 |
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| End bp | 1856665 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955606 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_562603 |
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| Protein GI | 91792952 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000133068 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAATC AAAAAGTATT ATCAGTAGTA ATCGCAAGTT TACTTAGTGC AACAGCTTGT
ACCTCCGAAG ATAAGGTAGT AACAGTCACC ATTCCCGAAG TCGATTTGCG GGTATTAGAA
ACCAGTGACT TACATGCCAA CATCATGGAC TTTAACTACT ACAGTGGCAA AGAAGACAAA
ACTATAGGCC TTGCCCGTAC AGCAAGCCTT ATCCATGCTG CTCGTAAAGA AGTCAGCAAC
TCAGTGCTTG TGGACAATGG CGACCTTATC CAAGGTAGCC CTATGGGCGA TTATGTTGCC
AGCATAGGTC TTCAAAAAGG GGATGTTCAC CCTGCCTACA AAGCCATGAA CACCCTAGAT
TATGATGTGG GTAACATAGG CAACCATGAA TTTAACTACG GCCTAGATTT TCTTGAAACC
GCCATTGCAG GCGCCGAGTT CCCTTATATT AATGCCAACG TTATCTGTGC CGACAAGAGC
GGTTGTTGGA ACGGTATTCA ATTTAGCGAG AACTTATTTA CGCCCTTTAT CATTAAAGAT
AAAGTCGTTA TCGACACCGA AGGTAAAGAG CACACCATTA AAGTGGGTTA CATCGGCTTT
GTGCCACCAC AAATTATGCT GTGGGATAAG CAAAACTTAA CGGGCAAGGT CGATACTTTA
GGTATTGTTC AAGCGGCGGA AAAGTTCGTT CCACAAATGA AAGCTCAAGG TGCTGATGTC
ATTATTGCCA TCCCGCACTC AGGCATAGGC TCCAGTGAAA ACCCTGGGGA TCCATGGGCT
GAAAATGCCA CTTATGCACT CACCAATGTC GCGGGTATTG ATGCCATTAT GTTTGGCCAC
AGTCATTCTG TATTCCCAGA TGATCGCTAT CAAGCGCTAG CAAACACCGA CGCCAGTAAG
GGGTTACTTA ACGGTATCCC AGCTGTTATG CCTGGTCGTT GGGGCGATAA CTTAGGGGTC
ATCGATCTTA AGTTACGCAA AGAAAATGGC AAATGGGCGG TTATTCATAA AGAGTCCAGT
TCAGCTGCAA GACCAATTTA TGACCTCAAA AACAAGGTTG AGCTAGTGCA AGCCGATGAC
GCAATTCACG ATGCCGTAAG TGCTGAGCAT ACAGGAACCT TAGCATATGT GGATCAACCC
ATAGGTGAAG CTGCCTCAGA CATGTTCAGC TTCTTGACCT TAGTGCAGGA TGATCCAACG
GTACAAATCG TATCTGATGC ACAAATCGCA GGTGTTAAAG CTAAGCTGCC TACTGAACTT
AAAGGCATTC CTATTCTGTC AGCCGCGGCG CCATTTAAGA CTGGTGGTCG TCACAGCACG
TCAAGTGATG CCGATCAGTA CGTTTTGGTG GATGCTGGCG CGCTAACCTA TAAAAATGCG
GCGGATTTAT ACCTCTACCC TAATACCATG GTTGCGGTTA AAGTCACAGG CGCAGAAGTG
AAAAACTGGC TTGAATGTTC AGCCAACCAG TTCAATCAAA TTGACCCTAA CAGCACAGCG
GTTCAATCCC TTATCAATTG GGATACCCAC AGAACTTATA ACTTTGATGT TATTGATGGC
GTAACCTATA AAATTGATGT GACTCAAGCC AATAAGTTAG ATGGCGATTG TAAAGTGGTT
AATGCTGATG CGAACCGCAT TGTGGATTTA ACCTATAAAT TCGACGATGG CCGTGAAATC
ACTGGTACTG AATTTTCAGC TCAAGAATTT ATTGTCGCCA CCAACAACTA CCGTGCTTTT
GGCGGTAAGT TTGCAGGTAC AGGTCCAGAT TTTGTGGTAC TTGAACTCCC AGATGCTAAC
CGCGAAGCCC TAGCCGCCTA TATCAGTGCA GAATCTAAAT TCAACGCAGT CACAGGTAAG
TATGATGGTA AAGTTGATCC AAGTGCCGAT AATAACTGGG GCTTTAAAAC CATTAACACC
ACCACAGCGC TAGACGTTCG TTTTGAGACC CAAAATAGCG AAAAAGCGGC AGGCTTTATT
GCCAACAATA AGCAAAGAGA CATGGTGAAA GTTGCCGTTG ATGAGTTAGG TTTTGCTGTC
TATAAAATCG ATTTAACCAA GTAA
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| Protein sequence | MLNQKVLSVV IASLLSATAC TSEDKVVTVT IPEVDLRVLE TSDLHANIMD FNYYSGKEDK
TIGLARTASL IHAARKEVSN SVLVDNGDLI QGSPMGDYVA SIGLQKGDVH PAYKAMNTLD
YDVGNIGNHE FNYGLDFLET AIAGAEFPYI NANVICADKS GCWNGIQFSE NLFTPFIIKD
KVVIDTEGKE HTIKVGYIGF VPPQIMLWDK QNLTGKVDTL GIVQAAEKFV PQMKAQGADV
IIAIPHSGIG SSENPGDPWA ENATYALTNV AGIDAIMFGH SHSVFPDDRY QALANTDASK
GLLNGIPAVM PGRWGDNLGV IDLKLRKENG KWAVIHKESS SAARPIYDLK NKVELVQADD
AIHDAVSAEH TGTLAYVDQP IGEAASDMFS FLTLVQDDPT VQIVSDAQIA GVKAKLPTEL
KGIPILSAAA PFKTGGRHST SSDADQYVLV DAGALTYKNA ADLYLYPNTM VAVKVTGAEV
KNWLECSANQ FNQIDPNSTA VQSLINWDTH RTYNFDVIDG VTYKIDVTQA NKLDGDCKVV
NADANRIVDL TYKFDDGREI TGTEFSAQEF IVATNNYRAF GGKFAGTGPD FVVLELPDAN
REALAAYISA ESKFNAVTGK YDGKVDPSAD NNWGFKTINT TTALDVRFET QNSEKAAGFI
ANNKQRDMVK VAVDELGFAV YKIDLTK
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