| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1569 |
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| Symbol | dnaE |
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| ID | 4018043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1823085 |
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| End bp | 1826564 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637955579 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_562577 |
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| Protein GI | 91792926 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.840877 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC CTCGTTTTGT TCATTTACGC GTCCACAGTG ATTTCTCCAT GACTGATGGT
GTCGCCAAGG TCAAGCCCAT ACTCGCCGAG GCGGAACGCC AAGGGATGGC CGCTATTGCC
TTAACGGATC AAAATAACTT TTGTGGTCTG GTTAAATTTT ATGGTGGCTG CCATAACGCC
GGCATCAAGC CCATAGTGGG CGCCGATTTC TGGATGCAAG TGCCAGGTTT CGATAAAGAG
CTCTGTGCGC TAACTATTAT CGCCATGGAT AACCATGGTT ATCAAAACCT GACTCAAATC
ATCAGCCAAG CTTATTTGCG CGGCCAGATC AATGGCAGGG TGGTGATAGA TCAAGACTGG
TTGGTGACTT ACAATCAAGG GATTTTAGTC TTGTCTGGCG CCAAAGAGGG CGATGTGGGC
AAGGCGTTGC TTAAGGGGAA TCTTCCCCAA GTAGACTCCT TAATCCAGTT TTACCAGACG
CATTTCGATG GCCGTTATTT TCTAGAGCTT ATTCGCACAG GCCGCAGCGA CGAAGAACGT
TACTTGCATA TGGCGGTTAA TCTAGCCAAG GAACGTGATT TGCCTGTGGT GGCCACCAAT
CAGGTGGTGT TCCTTAAGGC TGATGATTTC GAGTCCCATG AAATCCGCGT TGCCATTAGT
GATGGCTATA CCTTAGCCGA TCCTCGCCGG CCAAAAACCT ACAGTGCCGA GCAATACCTT
CGCAGCGAAG AGGAAATGTG TGCGCTGTTT AGCGACATTC CTTCGGCCTT AAGTAACTCA
GTTGAAATCG CCAAGCGTTG TAATGTCACC ATACGCTTGT ATGAGTACTT CCTGCCTAAT
TTTCCCACAG GGGATTTATC CACTGAAGAC TTTTTGGTGG TGGTGTCCGA AAAGGGCCTT
GAGGAGCGGC TGGAATTTTT ATTCCCAGAT GAGCAAGTGC GCGCCCAAAG ACGCGGCGAG
TATGATGAGC GATTAGCCAT TGAGCTCAAA GTGATTAACC AGATGGGATT CCCAGGTTAC
TTCCTTATCG TGATGGAGTT TATCCAATGG GGTAAAGACA ACGGCATTCC AGTGGGCCCA
GGTCGTGGTT CGGGTGCAGG CTCCTTGGTG GCTTATGCCC TTAAAATTAC TGACCTTGAC
CCGTTAGAGT TTGACTTGCT GTTCGAGCGC TTCTTAAACC CTGAGCGTGT CTCCATGCCC
GACTTTGACG TCGACTTCTG CATGGACAGG CGCGATGAAG TGATAGACCA CGTGGCCGAC
TTGTATGGCC GCGAAGCTGT GTCGCAAATC ATTACCTTCG GTACCATGGC CGCTAAAGCT
GTGGTGCGGG ATGTGGGTAG GGTGCTTGGG CACCCCTATG GTTTCGTCGA TAGAATTTCA
AAGCTTATCC CAGCAGAGCC TGGGATGACG TTAGCAAAAG CCTTTGAAGT AGAACCGGCT
CTGCAAGAGT CCTATGATGG CGATGAAGAT GTTAAAGAGC TCATCGACAT GTGTCGCCGC
CTTGAAGGCG TGACTCGTAA CGCCGGTAAA CATGCTGGGG GCGTGGTTAT CGCGCCCACA
AAGATAACCG ACTTCTCGCC GCTGTATTGC GACGCCGAAG GCAATAACCC TGTGACCCAG
TTCGATAAAA ACGACGTTGA AACGGCGGGT CTAGTCAAAT TCGACTTCTT GGGTCTTCGA
ACCTTAACCA TCATCGACTG GGCGCTTGAG ATGGTTAACA AGGTGCAATT GCAAAATGGC
TTAGATCCCA TTCGCATCGA AGCCATTCCT CTGGACGATC CTAAGTGCTT TAAATTATTG
CAGCGTTACG AAACCACTGC GGTATTCCAG CTTGAATCCC GCGGCATGAA AGATTTGATC
AAACGTCTGC AGCCGGATTG CTTCGAAGAC ATGATTGCTT TGGTGGCCCT GTTCCGCCCC
GGCCCATTGC AGTCCGGCAT GGTTGATAAC TTTATCGAAC GTAAGCACGG CCGTGAGGAA
GTGTCTTACC CCGATGCCCA GTATCAGCAC GAGTCATTAC GTGAGCTCTT GTCACCCACC
TACGGCATTA TTCTCTATCA AGAGCAGGTG ATGCAGATAG CTCAGGTGTT ATCTGGCTAT
ACCTTAGGTG GCGCCGACAT GCTGCGCCGC GCCATGGGTA AGAAAAAACC CGAAGAAATG
GCCAAGCAGC GCGGCACCTT TAAGGAAGGG GCGATAAACA ACGGTATCGA TGGCGAGCTA
TCGATGAAAA TCTTCGACTT GGTGGAAAAA TTCGCCGGTT ACGGTTTCAA CAAGTCTCAC
TCCGCCGCCT ACGCTTTAGT GTCTTACCAA ACCCTGTGGC TTAAGACGCA TTTCCCCGCT
CAGTTTATGG CGGCGGTGAT GTCCGCGGAT ATGGATAACA CAGATAAAAT CGTCACCTTA
GTGGATGAGT GTGAGCGCAT GGGCTTGCCG CTTATTCCTC CGGATGTGAA CAAGGGCTTA
TTTAAGTTTA CTGTGGATGA GGCCTTTAAT ATTGTCTACG GAATTGGCGC CATTAAAGGC
GTGGGTGAGG GGCCGGTGGA GTCCATTCTT GAGGCCAGAG TGAATGGACC TTTTACCGAT
TTATTCGATT TTTGTGCTCG AGTGGATTTG AAGAAACTCA ATAAACGTAT CATCGAAAAG
CTCATTTGTG CTGGTGCGCT GGACAGCCTT GGGCCGCACC GCGCCTCCAT GATGGCAACC
TTACCACAGG CCATCAGCGC CGCGGCGCAG CACGCCAAAG CCGAGGCCAT AGGTCAGCAC
GATATGTTTG GCTTGCTGAA CAGTGAGCCC GAAGATAACA AACAACAGTT TGTGGAATGT
ATGCCTTGGC CGGATAAAAT CTGGCTCGAA GGTGAGCGTG ATACTTTAGG CTTGTACCTG
ACAGGTCACC CCATCAACCA GTATTTGAAA GAGCTTAAGC AATACACCTC GGGTCGATTA
AAGGACGTAC ACCCCACCGA GCGCGGTAAA ACCGCCAAAG CAGCGGGGCT TGTGGTGGCA
ACCCGAGTGA TGCTCACCAA GCGCGGCGCC AAGATGGGGC TGGTGACTTT AGATGATAAG
AGCGCGCGGC TTGAGGTGAT GTTATTTACC GAAGCCTTTG AGAAGTTTAA TCATCTGCTG
GAAAAAGATC GCATCTTAAT CTGCGAAGGC GAGGTCAGCT ATGATGATTT TGCCGGCGGC
AATCGCATGA CGGCGCGCAA TATCATCGAC ATAGGTGAGG CAAGGAGTCA TTTTGCCCGC
GCCGTTGAGC TTAGGTTAGC GGCAGAGCGA GTACCAGATG AAGCTTGGCT TGAGCAATTT
AAAGCGACCC TTGAGCCTTG GAAAGGGGGC GCTGTGCCTG TGGTGATTGA TTATATGCAA
GAAGGCACAC GGGCAAGTTT CACCTTAGGG GCAGCATGGC AGGTGAATCC CAGTGATGAG
CTTATGTTAG CTCTGGAGTC CTTGTTAGGC TCTGAAAATG TTAAACTTAA ATTTGATTAG
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| Protein sequence | MTDPRFVHLR VHSDFSMTDG VAKVKPILAE AERQGMAAIA LTDQNNFCGL VKFYGGCHNA
GIKPIVGADF WMQVPGFDKE LCALTIIAMD NHGYQNLTQI ISQAYLRGQI NGRVVIDQDW
LVTYNQGILV LSGAKEGDVG KALLKGNLPQ VDSLIQFYQT HFDGRYFLEL IRTGRSDEER
YLHMAVNLAK ERDLPVVATN QVVFLKADDF ESHEIRVAIS DGYTLADPRR PKTYSAEQYL
RSEEEMCALF SDIPSALSNS VEIAKRCNVT IRLYEYFLPN FPTGDLSTED FLVVVSEKGL
EERLEFLFPD EQVRAQRRGE YDERLAIELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEFDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAD
LYGREAVSQI ITFGTMAAKA VVRDVGRVLG HPYGFVDRIS KLIPAEPGMT LAKAFEVEPA
LQESYDGDED VKELIDMCRR LEGVTRNAGK HAGGVVIAPT KITDFSPLYC DAEGNNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALE MVNKVQLQNG LDPIRIEAIP LDDPKCFKLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDAQYQH ESLRELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRGTFKEG AINNGIDGEL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPA
QFMAAVMSAD MDNTDKIVTL VDECERMGLP LIPPDVNKGL FKFTVDEAFN IVYGIGAIKG
VGEGPVESIL EARVNGPFTD LFDFCARVDL KKLNKRIIEK LICAGALDSL GPHRASMMAT
LPQAISAAAQ HAKAEAIGQH DMFGLLNSEP EDNKQQFVEC MPWPDKIWLE GERDTLGLYL
TGHPINQYLK ELKQYTSGRL KDVHPTERGK TAKAAGLVVA TRVMLTKRGA KMGLVTLDDK
SARLEVMLFT EAFEKFNHLL EKDRILICEG EVSYDDFAGG NRMTARNIID IGEARSHFAR
AVELRLAAER VPDEAWLEQF KATLEPWKGG AVPVVIDYMQ EGTRASFTLG AAWQVNPSDE
LMLALESLLG SENVKLKFD
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