Gene Sden_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1562 
Symbol 
ID4018036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1815628 
End bp1818111 
Gene Length2484 bp 
Protein Length827 aa 
Translation table11 
GC content42% 
IMG OID637955572 
Productsurface antigen (D15) 
Protein accessionYP_562570 
Protein GI91792919 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000380588 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATTGA ATAAAATTTT TGCCTCGATG ATATTAGTCG GTGCGTCTTT TTCAGGGAAT 
GGTTGGGCAG ATAACTTCCA ACCTTTTGAA GTCACCGACA TCCAAGTAGA AGGTTTACAA
CGTGTTGCCC TAGGTGCTGC TCTTTTGAGT TTGCCAGTTA AAGTGGGTGA TACCGTAGAT
CAAGTTAAAT TACAGCAAGC GATTAAGAGC CTTTATGGCT CTGCCAACTT TGAACTCATC
GATGTTAGCC ATGAAAATGG TGTCATCTTT GTTAAAGTTA AAGAACGCCC AACGATCAGC
GTGATCACTT TTGATGGCAA CAAAGACATC AAAGAAGAAC AACTTCAGCA AAGTCTAGAT
GATTCTGGAG TTAAAATCGG CGAGTCCTTA GACAGAACCA TGATTACTGG TATCGAGAAG
GGTCTTCAGG ACTTTTATTA CGGTGTAGGT AAATACGGCG CTAAGGTTGA AGCACAGGTG
ATCAACCTGC CACGAAACCG TGTCGAACTT AAATTTAAGT TTGTTGAAGG TTTAGCTGCC
GAACTTCGCC AAATTAACGT GGTGGGAAAC ACTGTCTTTA GTGATTCAGA GCTGATTGAG
ATGCTTGAGC TTAAAGATTA CGTGGCTTGG TGGGACTTAT TTGGCGAACG TCGATATCAA
AAGCAGAAAC TGCAAGCTGA CCTTGAAACC ATTAAGACGT ATTACCACAA TCAGGGTTAT
ATTCGCTTTA ATGTGACGTC GACCCAAGTG GCCATGACAC CTGACAGAAA AGGTTTGTAT
GTCACCATTA ATGTCGATGA AGGTGAAAAG TATAATGTTA AAGAAGTAAA CCTCACTGGG
GAGCTTATGG GTCGTGAAGA GTTGTTAAAG GCAATTTTGC CGATCAAATC TGGCGAAACT
TATAACGGCG GCACGGTAAC CTTTACTGAA GAAATGTACA GCAAGTATTT AGGTCGTTTT
GGCTATGCTT ACCCTGAAGT GAAAACCTAC CCTGAAATTA ATGATGATAC CAAAGAAGTG
GTGCTAAACA TTAATGTGAT GCCAGGTAAG CGTGTCTATG TACGCTCGAT TAACTTTACC
GGCAATACAG TGACCCAAGA TGAAGTGATG CGCCGACAAC TGCGTCAAAT GGAAGGGGCT
TGGCTTAATT CAGACCAAAT TGAAACGTCG AAATTAAACC TTAACCGGTT AGGGTATTTT
GAGACCGTAG ATACAGAAAC CATTCAAATC CCCGGCAGCG ATGATTTGGT GGATGTAGAT
TTTAATGTCA AAGAGCAGCC CTCTGGTTCA TTTAACGCAG GTATTGGTTA TGGCACGGAA
TCTGGCATGA GTTTGCAATT TGGTATCGAG CAAAATAATT TTTTAGGTAC AGGTAAGCAA
GCCGGTTTTA GCATCAATAC CAACAAGTAC CAAAAGAGTG CAAACTTGTC TTATACCGAT
CCTTATTGGA CCAAAGACGG TGTCAGTTTG GGTGGCAGTT TATATTGGAG TGAGTTTGAC
GCTAATCAGG CAAACCTTGA GCGTTATAAA AATAGCTCTT ATGGTATCTC TCTCAATTCA
GGCTTTCCAA TTAATGAAGT CAACCGCCTA AATGGTGGTA TAGGTTATCG TCATAATACG
ATTTCTGAAG TGTCATCCTA TGAGCAGGCG CTGCGTTTTT ACAACATTTA TCGTAAAACA
GACGATCCCG ATTCAGATTT AAGCTTTGAT AACTTTGAAT TAAGTGCCGG TTGGTCAAGA
AGCACGTTAA ACCGTGGTAC TTTCCCAACT GACGGTTCAT CACAACGATT AAACGGTAAA
ATGACAGTGC CAGGCTCTGA TCTGCAGTAT TTTAAGACAG ATTTTGATAC TAACTTTTAT
TTCCCATTAA ACCGTAAACA GAGCTTCGTT GTTTTGGCTC GTGGTCGCAT AGGCTATGCT
AATGGCTATG GAAAGTTTAA TGAAAACGAT CAAATCATTC CGTTTTGGGA GAATTATTAC
TCAGGCGGCA GTAGCTCGCT GCGCGGTTTT AAGTCGAACT CGGTTGGTCC AAGATCATTC
TATAAACGTC CTGACTTAGA CCAAGGCTCA CCGGATTCAT CGGGTGACTC TAGTAATTTA
CCTGGGGATT CAAATTACAT CCAGAGAAGC CAAGGCCGTT CTATTGGTGG TAATGCGATT
GCTTCGGCCA GTCTTGAGCT TATCGTGCCG ACGCCTTTCC TCGATGAAGC CTATAGCAAT
TCAGTGCGAA CTAGCTTCTT CGTTGACGCG GGTAACGTGT GGGATACAGA GTTTGATTAT
GACTCCTATC GCACGCTTCC TGCTGAACAG TTTGCCAAGC TTGAAGATTA CAGCGATCCT
GCCAGACTCA GAGCCTCTTG GGGTATGAGC GTGCAGTGGT TATCACCTAT GGGACCTATG
GTATTTAGCT TGGCTTGGCC ATTGAAAGAA TATGAAGATG ATGACACAGA GATCTTCTCT
TTCAATATTG GCAAAACCTT CTAA
 
Protein sequence
MRLNKIFASM ILVGASFSGN GWADNFQPFE VTDIQVEGLQ RVALGAALLS LPVKVGDTVD 
QVKLQQAIKS LYGSANFELI DVSHENGVIF VKVKERPTIS VITFDGNKDI KEEQLQQSLD
DSGVKIGESL DRTMITGIEK GLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFVEGLAA
ELRQINVVGN TVFSDSELIE MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYHNQGY
IRFNVTSTQV AMTPDRKGLY VTINVDEGEK YNVKEVNLTG ELMGREELLK AILPIKSGET
YNGGTVTFTE EMYSKYLGRF GYAYPEVKTY PEINDDTKEV VLNINVMPGK RVYVRSINFT
GNTVTQDEVM RRQLRQMEGA WLNSDQIETS KLNLNRLGYF ETVDTETIQI PGSDDLVDVD
FNVKEQPSGS FNAGIGYGTE SGMSLQFGIE QNNFLGTGKQ AGFSINTNKY QKSANLSYTD
PYWTKDGVSL GGSLYWSEFD ANQANLERYK NSSYGISLNS GFPINEVNRL NGGIGYRHNT
ISEVSSYEQA LRFYNIYRKT DDPDSDLSFD NFELSAGWSR STLNRGTFPT DGSSQRLNGK
MTVPGSDLQY FKTDFDTNFY FPLNRKQSFV VLARGRIGYA NGYGKFNEND QIIPFWENYY
SGGSSSLRGF KSNSVGPRSF YKRPDLDQGS PDSSGDSSNL PGDSNYIQRS QGRSIGGNAI
ASASLELIVP TPFLDEAYSN SVRTSFFVDA GNVWDTEFDY DSYRTLPAEQ FAKLEDYSDP
ARLRASWGMS VQWLSPMGPM VFSLAWPLKE YEDDDTEIFS FNIGKTF