Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1562 |
Symbol | |
ID | 4018036 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1815628 |
End bp | 1818111 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637955572 |
Product | surface antigen (D15) |
Protein accession | YP_562570 |
Protein GI | 91792919 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000380588 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTGA ATAAAATTTT TGCCTCGATG ATATTAGTCG GTGCGTCTTT TTCAGGGAAT GGTTGGGCAG ATAACTTCCA ACCTTTTGAA GTCACCGACA TCCAAGTAGA AGGTTTACAA CGTGTTGCCC TAGGTGCTGC TCTTTTGAGT TTGCCAGTTA AAGTGGGTGA TACCGTAGAT CAAGTTAAAT TACAGCAAGC GATTAAGAGC CTTTATGGCT CTGCCAACTT TGAACTCATC GATGTTAGCC ATGAAAATGG TGTCATCTTT GTTAAAGTTA AAGAACGCCC AACGATCAGC GTGATCACTT TTGATGGCAA CAAAGACATC AAAGAAGAAC AACTTCAGCA AAGTCTAGAT GATTCTGGAG TTAAAATCGG CGAGTCCTTA GACAGAACCA TGATTACTGG TATCGAGAAG GGTCTTCAGG ACTTTTATTA CGGTGTAGGT AAATACGGCG CTAAGGTTGA AGCACAGGTG ATCAACCTGC CACGAAACCG TGTCGAACTT AAATTTAAGT TTGTTGAAGG TTTAGCTGCC GAACTTCGCC AAATTAACGT GGTGGGAAAC ACTGTCTTTA GTGATTCAGA GCTGATTGAG ATGCTTGAGC TTAAAGATTA CGTGGCTTGG TGGGACTTAT TTGGCGAACG TCGATATCAA AAGCAGAAAC TGCAAGCTGA CCTTGAAACC ATTAAGACGT ATTACCACAA TCAGGGTTAT ATTCGCTTTA ATGTGACGTC GACCCAAGTG GCCATGACAC CTGACAGAAA AGGTTTGTAT GTCACCATTA ATGTCGATGA AGGTGAAAAG TATAATGTTA AAGAAGTAAA CCTCACTGGG GAGCTTATGG GTCGTGAAGA GTTGTTAAAG GCAATTTTGC CGATCAAATC TGGCGAAACT TATAACGGCG GCACGGTAAC CTTTACTGAA GAAATGTACA GCAAGTATTT AGGTCGTTTT GGCTATGCTT ACCCTGAAGT GAAAACCTAC CCTGAAATTA ATGATGATAC CAAAGAAGTG GTGCTAAACA TTAATGTGAT GCCAGGTAAG CGTGTCTATG TACGCTCGAT TAACTTTACC GGCAATACAG TGACCCAAGA TGAAGTGATG CGCCGACAAC TGCGTCAAAT GGAAGGGGCT TGGCTTAATT CAGACCAAAT TGAAACGTCG AAATTAAACC TTAACCGGTT AGGGTATTTT GAGACCGTAG ATACAGAAAC CATTCAAATC CCCGGCAGCG ATGATTTGGT GGATGTAGAT TTTAATGTCA AAGAGCAGCC CTCTGGTTCA TTTAACGCAG GTATTGGTTA TGGCACGGAA TCTGGCATGA GTTTGCAATT TGGTATCGAG CAAAATAATT TTTTAGGTAC AGGTAAGCAA GCCGGTTTTA GCATCAATAC CAACAAGTAC CAAAAGAGTG CAAACTTGTC TTATACCGAT CCTTATTGGA CCAAAGACGG TGTCAGTTTG GGTGGCAGTT TATATTGGAG TGAGTTTGAC GCTAATCAGG CAAACCTTGA GCGTTATAAA AATAGCTCTT ATGGTATCTC TCTCAATTCA GGCTTTCCAA TTAATGAAGT CAACCGCCTA AATGGTGGTA TAGGTTATCG TCATAATACG ATTTCTGAAG TGTCATCCTA TGAGCAGGCG CTGCGTTTTT ACAACATTTA TCGTAAAACA GACGATCCCG ATTCAGATTT AAGCTTTGAT AACTTTGAAT TAAGTGCCGG TTGGTCAAGA AGCACGTTAA ACCGTGGTAC TTTCCCAACT GACGGTTCAT CACAACGATT AAACGGTAAA ATGACAGTGC CAGGCTCTGA TCTGCAGTAT TTTAAGACAG ATTTTGATAC TAACTTTTAT TTCCCATTAA ACCGTAAACA GAGCTTCGTT GTTTTGGCTC GTGGTCGCAT AGGCTATGCT AATGGCTATG GAAAGTTTAA TGAAAACGAT CAAATCATTC CGTTTTGGGA GAATTATTAC TCAGGCGGCA GTAGCTCGCT GCGCGGTTTT AAGTCGAACT CGGTTGGTCC AAGATCATTC TATAAACGTC CTGACTTAGA CCAAGGCTCA CCGGATTCAT CGGGTGACTC TAGTAATTTA CCTGGGGATT CAAATTACAT CCAGAGAAGC CAAGGCCGTT CTATTGGTGG TAATGCGATT GCTTCGGCCA GTCTTGAGCT TATCGTGCCG ACGCCTTTCC TCGATGAAGC CTATAGCAAT TCAGTGCGAA CTAGCTTCTT CGTTGACGCG GGTAACGTGT GGGATACAGA GTTTGATTAT GACTCCTATC GCACGCTTCC TGCTGAACAG TTTGCCAAGC TTGAAGATTA CAGCGATCCT GCCAGACTCA GAGCCTCTTG GGGTATGAGC GTGCAGTGGT TATCACCTAT GGGACCTATG GTATTTAGCT TGGCTTGGCC ATTGAAAGAA TATGAAGATG ATGACACAGA GATCTTCTCT TTCAATATTG GCAAAACCTT CTAA
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Protein sequence | MRLNKIFASM ILVGASFSGN GWADNFQPFE VTDIQVEGLQ RVALGAALLS LPVKVGDTVD QVKLQQAIKS LYGSANFELI DVSHENGVIF VKVKERPTIS VITFDGNKDI KEEQLQQSLD DSGVKIGESL DRTMITGIEK GLQDFYYGVG KYGAKVEAQV INLPRNRVEL KFKFVEGLAA ELRQINVVGN TVFSDSELIE MLELKDYVAW WDLFGERRYQ KQKLQADLET IKTYYHNQGY IRFNVTSTQV AMTPDRKGLY VTINVDEGEK YNVKEVNLTG ELMGREELLK AILPIKSGET YNGGTVTFTE EMYSKYLGRF GYAYPEVKTY PEINDDTKEV VLNINVMPGK RVYVRSINFT GNTVTQDEVM RRQLRQMEGA WLNSDQIETS KLNLNRLGYF ETVDTETIQI PGSDDLVDVD FNVKEQPSGS FNAGIGYGTE SGMSLQFGIE QNNFLGTGKQ AGFSINTNKY QKSANLSYTD PYWTKDGVSL GGSLYWSEFD ANQANLERYK NSSYGISLNS GFPINEVNRL NGGIGYRHNT ISEVSSYEQA LRFYNIYRKT DDPDSDLSFD NFELSAGWSR STLNRGTFPT DGSSQRLNGK MTVPGSDLQY FKTDFDTNFY FPLNRKQSFV VLARGRIGYA NGYGKFNEND QIIPFWENYY SGGSSSLRGF KSNSVGPRSF YKRPDLDQGS PDSSGDSSNL PGDSNYIQRS QGRSIGGNAI ASASLELIVP TPFLDEAYSN SVRTSFFVDA GNVWDTEFDY DSYRTLPAEQ FAKLEDYSDP ARLRASWGMS VQWLSPMGPM VFSLAWPLKE YEDDDTEIFS FNIGKTF
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