Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1532 |
Symbol | |
ID | 4018005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1780435 |
End bp | 1784787 |
Gene Length | 4353 bp |
Protein Length | 1450 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637955542 |
Product | GGDEF domain-containing protein |
Protein accession | YP_562540 |
Protein GI | 91792889 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCATCT CACGTATTGC GACATTTTTT ACCGCTTTTT TCCTCAGCTG TGCTTTTTTC CCAACAGCTC CAGCCTTGGC CTTTGAAACA GTTGTGGAAC CAGTGCCTGG CTCTGCTGCA CAAACCTCAA CCCAAGACCA ACCTGAGTCC AATTTTTGGC TGCAAAACCG CAACGAATTT GATATCGAGC TCAATTACGA CAGCTACAGC GTCGCCGAAG GACTTTCACA AAGTATCGTC ACTAGCATAG TCGAAGATAG AGAAGGCTAC GTCTGGATAG GTACACTCAA TGGCTTAAAC CGCTTCGATG GTACCCATTT CAAACACTTC TTCGCCGATG ATACCGGTTC TGGCCTGCCA AGCTCCTTTA TAAGAAGCCT TGCTTTAGAC CCTGAGGGCA GATTATTAGT AGGAACCGAT GCCGGACTAG TTCACTATAA TACTGAACTA GAGTCATTTT CAAAAGTCCC TCATCTACCA AATAATTTAT CTCAAGCGAT ATGGGCACTG GAGTCAATAA ATGAAAGTTT ATTTATAGGG TTGAAAAATA AAATAATAAT CTCAAACAAC CAGAAAGATA TATTTATCGA GTCTAAAAAA CTTAAGGAAG TAAAAAAAAT AAGAGCATTC AGAAATGATA CTTTCATAAG AAATTATGAA GGAGAAGTAT TTCTACACAG TAATGGAAAG TTAACAAAGA TATCACCTAG CAGCTATGAC ATTGAGATTA TTAATGACGA ATTATTCATA GCATCAAAAG CTGGGTTGTA CACCTACAAG AAAAAGAACA TCAAAAAAAT ATCAAACTCA ATTTACACAA ACATAACTAA ACATTCAAAT GAAATAGTTG CACTAGCCGG GAATGACATT TACATCATAT CTAATACTTA CATAGAAAAA CTTATTGGAA CAATAAAAAA AACTAACGAA GACTTCGAAA GGCTTTTCTT AAAAATAATA AATGAAGATA TATTTATTAG CATAATGAAC GCAGGATTTA ACCACATAAC ACAGAAAAAA AATCTGGTAA TTAGCCCAAA AAACATTAAT GGGAATGTTT GGTCTATAGC CAAAGGAAAC GACGCTATAT ACATAGCGAC AGATTCCAGC GTCATAAAAG CTTACACGAA AAATTTAGAT TTTATTACGA ATATATCCAC AAATGCTTCT GAAGGACCAA AAACAATAGC TATTTATAAA AGAAATCTCT ATGTCGGCTC TCCGTCTGGA CTAATAACAA ATGACTTATC AAAAAACATT ACACAAAGCT TATCATCCGA GCATATTTCT CACATCCTAG TTTACAATGA ACAAATTATT GCAGGCACTG CTTCTGGGAG CATTATATTT TTAAATGAGA ATAATGAAAT AACAAATAAA TATATCCCAA AGGAAAAGTA TCCGATATAC GATTTATTTA TGCAAGAAGG GACACTATGG ATAGCCTCCC AAAATGGATT GAAAAAGTTA TCAAATATGA AAGAAGAAAT TATATACGAC AAAGACATTG TTACCAGTAT AAAAAAAACA AATAACTCTT TCATATTTAG CACAAGAACA TCTGTTTTTA CTTTTGATGA CGAAAAATCT GAAATAAAAG AGATTTATTC TGGTAGAAAA CTTATTTACT CCAGTGCGGT CAGCGAAAAC AAAATTATTA TTTCATCAAA CGGAAAGATA AGCATTATTG ATATTTCAAA AAACAAAACG ACCGATTTAC TAGTTCAGCA TGGCTCCCAG ATAGATTACA ACGTAAATTC AGTTATAGAG CTGGGTGAGG ATATTTTTTT TGGCGGTTCA AATGGGCTTA GCATCATTAA TGATAAAATA ATTTCTTCAT TCTTAAACAA AAACAAAAAA AACAACATAG CCATTACGGA CCTATCAATA TTCAACACCA TTGAAAACAT TGGCGGATTA ACATTAACAA AATCCATCAA CGATTTAAGA TATATTACTT TGAAATTCTC TGACTATCCT TTTTCTTTCA AATTTATTGT GCCTGGGAAA GATTTAAACG ATGTCAGTTT TTACTATCAA ATGAAAGGTC TGTCCAATGA TTGGCTTATT GCAAAAGAAG TTAACTCCGC TACTTATACT AACTTATCTC ATGGCGAATA TTTTTTTAAC GTCTATGCCA TTGATAAATT AACGGGCCAG CGAGGCCCTA CCAAATCCAT TAAAGTCATT ATTACCCCCC CTTGGTGGTT ATCTGTCGAA GCCAAATTAA TCTATGCCCT TCTTACCTTG CTATTTTCCA GCGCTTTAGT CAGAGCAATA ATGCGTCGCA GAGTCATTCA GAAGCAGATA GCCTTGAGCG AAGAACGGCT AAAATTATCA CTTTGGGGCA GCGGCGATGA AATGTGGGAT TGGGACATAG AATCAGGCAA AATTTATCGC TCTAACATCT GGGGCACCTT GGAGTTTCCT CAAGATGGCC AAAGATCTGG AGACGTCGAT GGCGAAAGCA ATATTCACCC TCAAGATCAA GCTCGAGTGC AGCAGGCTTT AGATGACCAC TTTGAAGGAG AAACAGACCA TTTTGAAGTC GCCTATCGCG TTAAAAATAG AAATAATGAA TGGCTGTGGA TTTTAGATAG GGCTAAAATT GTTGAGCGAG ACAACAAAGA ACGCCCGCTA CGAATGACGG GGACCATCAA AGATATCAAT AATATCAAGC AAACAGAAGA GCAGCTGAGG CTATTTGCCA GAGCCATTGA AAACATCTCC GAAGGCATGT TTATATTGGA CGCAGAACAT AGGTTTTTGG AAGTCAATTC CGCTTGTTGC AGCCTGCTAC AAAGAACAAA ATCATCATTT ACCGGTGAGC TGCTGTCATT TAATCTCTAT CCTGAGTCAT TTTCAACTCA AATTCGCAGT ATTATAACTC AGCAAGGCTA TTGGAGCGGC GACGTCGACG CCTTAAAGAG CGATGACTCA ACATTTCTTA TGTCACTGAC TATCGATGCC ATTAAGGACG AATTAGGGCT GTTCAGCCAT TATGTGGGTA TATTTTCAGA TATCACCCGC AGAAAACAGC AAGAAGAGGA ACTAAGAAAA CTCACCAATA ACGACATTTT AACAGGCCTT GCTAACCGCT CCAGTTTGCA AGTAACTTTA AGCAATCTCG TCAAAAAAGA CATACATCAT ACCTTGATGG TATTAGATCT TGATAATTTT AAGCGTATCA ATGACTCATT AGGTCACCAA ATAGGTGATA GCTTAATTAT CAGTGTTGCT GAGCGTATCC AAGCAATCAT TCCTTCCCAT GCAAGCCTTT ACCGACTCGG TGGTGATGAG TTTGCTATTT TACTGGATAA AAATCCTGAT ATAGCCTCCA GTGCAGCCAT AGCAGGAAGC GTCATCAAGG ATCTTAAAAC GCCATTTTCA ATTGAATCAG AACAATTGGT CATTGGTATA AGTATTGGCA TAGTACTTTA TCCAGAGGAT GAGCAAAATG AACAAGCCCT TCTTAGAAAA GCTGACATTG CCATGTACCA TGCTAAATCA GCAGGTGGCA ACCGATACCA GTTTTATGCC GAATCACTTA ATCAAAACGT GTTAAGGCAA CTTGAAGTAG AAAATCTTAT TCGCCAAGGA TTAAAAGAGG ACTTATTCGA AGTGCACTAC CAAGCTAAGG TGGATCTTAA GCTTGACAGA ATTACAGGGA TGGAGGCTCT TGTCAGGCTA AATCATCCTC AGCTTGGCCT CATTCCCCCC AATGATTTCA TCCCCCTTGC TGAAGACAAT GGCCTCATTA TCGAGATTGG CGATATTGTA TTAAGAAAAG CCTGCACCGC AGCCCAAAGC TGGCGCCAAC AAGGGATATT TAATGGTCGC ATCGCCGTCA ATTTATCGTC GAAACAATTT GCCTTGCCCG ACCTAGTGCA AAGAATTGAG TCAATATTAT GTCAAACTGG TCTTCCTGCC GAAAACCTAG AGCTTGAAAT AACCGAAGGC ACTGTTATTA AAAATCCTGA AAGTGCCATT AAAGTCATGC AACAGCTGGC TAAGATGGGT ATTAGCCTAG CCTTGGATGA TTTTGGCACT GGCTATTCTT CACTGTCATA TTTGAAGCGC TTCCCGATCC ACAGATTAAA AGTTGATAAG AGCTTTGTTG ATGATATCGA TAAGTCAGAC ATGGATCTAA AAATGGTGGA TTCCATTATC ACTATCGCCC ATAACATGGG ACTCACTGTC GTGGGAGAAG GGGTTGAGCA AGCCGCCCAA CTATCCATTC TGAAAGCACT AAATTGCGAG GAAATTCAAG GGTATATTTT TAGCAAACCA ATTAAAGAAA GTGAATTCAC TCAACTATTG GTAAACGATA TCAACAAGAA TCGGGTTGAA TAA
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Protein sequence | MPISRIATFF TAFFLSCAFF PTAPALAFET VVEPVPGSAA QTSTQDQPES NFWLQNRNEF DIELNYDSYS VAEGLSQSIV TSIVEDREGY VWIGTLNGLN RFDGTHFKHF FADDTGSGLP SSFIRSLALD PEGRLLVGTD AGLVHYNTEL ESFSKVPHLP NNLSQAIWAL ESINESLFIG LKNKIIISNN QKDIFIESKK LKEVKKIRAF RNDTFIRNYE GEVFLHSNGK LTKISPSSYD IEIINDELFI ASKAGLYTYK KKNIKKISNS IYTNITKHSN EIVALAGNDI YIISNTYIEK LIGTIKKTNE DFERLFLKII NEDIFISIMN AGFNHITQKK NLVISPKNIN GNVWSIAKGN DAIYIATDSS VIKAYTKNLD FITNISTNAS EGPKTIAIYK RNLYVGSPSG LITNDLSKNI TQSLSSEHIS HILVYNEQII AGTASGSIIF LNENNEITNK YIPKEKYPIY DLFMQEGTLW IASQNGLKKL SNMKEEIIYD KDIVTSIKKT NNSFIFSTRT SVFTFDDEKS EIKEIYSGRK LIYSSAVSEN KIIISSNGKI SIIDISKNKT TDLLVQHGSQ IDYNVNSVIE LGEDIFFGGS NGLSIINDKI ISSFLNKNKK NNIAITDLSI FNTIENIGGL TLTKSINDLR YITLKFSDYP FSFKFIVPGK DLNDVSFYYQ MKGLSNDWLI AKEVNSATYT NLSHGEYFFN VYAIDKLTGQ RGPTKSIKVI ITPPWWLSVE AKLIYALLTL LFSSALVRAI MRRRVIQKQI ALSEERLKLS LWGSGDEMWD WDIESGKIYR SNIWGTLEFP QDGQRSGDVD GESNIHPQDQ ARVQQALDDH FEGETDHFEV AYRVKNRNNE WLWILDRAKI VERDNKERPL RMTGTIKDIN NIKQTEEQLR LFARAIENIS EGMFILDAEH RFLEVNSACC SLLQRTKSSF TGELLSFNLY PESFSTQIRS IITQQGYWSG DVDALKSDDS TFLMSLTIDA IKDELGLFSH YVGIFSDITR RKQQEEELRK LTNNDILTGL ANRSSLQVTL SNLVKKDIHH TLMVLDLDNF KRINDSLGHQ IGDSLIISVA ERIQAIIPSH ASLYRLGGDE FAILLDKNPD IASSAAIAGS VIKDLKTPFS IESEQLVIGI SIGIVLYPED EQNEQALLRK ADIAMYHAKS AGGNRYQFYA ESLNQNVLRQ LEVENLIRQG LKEDLFEVHY QAKVDLKLDR ITGMEALVRL NHPQLGLIPP NDFIPLAEDN GLIIEIGDIV LRKACTAAQS WRQQGIFNGR IAVNLSSKQF ALPDLVQRIE SILCQTGLPA ENLELEITEG TVIKNPESAI KVMQQLAKMG ISLALDDFGT GYSSLSYLKR FPIHRLKVDK SFVDDIDKSD MDLKMVDSII TIAHNMGLTV VGEGVEQAAQ LSILKALNCE EIQGYIFSKP IKESEFTQLL VNDINKNRVE
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