| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1522 |
|---|
| Symbol | |
|---|
| ID | 4017401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 1767690 |
|---|
| End bp | 1768253 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955532 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_562530 |
|---|
| Protein GI | 91792879 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATA GCTTTCGAAA GAAAAAGTCT GAACCCACGG TCATATCTGA CATGCTAACT
AAACAACGAC GTTACGATAG CCTCGTCAGG GCACTTCATA CTGATTTATT CCGCTACGCC
TACTGGCTGT GTGGTAATAG ACACATAGCT GAAGATATCA CTCAAGAAAC CTTCTTACGG
GCATGGCGCT CGCTGGATTC GCTTAAGGAT GATAAAGCCG CCAAAGCCTG GCTTATCACC
ATTTTGCGCA GGGAAAATGC CCGCAGGTTC GAACGTAAGC AGTTTGATTA TTCTGATGTG
GAACAAGATA CCCTCGAAGA TCATTTGTCC TCCAGCACGG AAGACAAAAC CGAGCAATAT
TGGCTACGAC GTCAAATTGG TAAGCTTGAG ATGGAGTATC GGGAACCACT CTTGCTGCAA
CTCATCGGTG GTTTTAGCGG TGATGAAATT GCTAACCTAT TAGAGTTAAA CAGAAATACT
GTGATGACGC GCCTGTTTAG GGCTCGTAAT CAATTAAAAG ACGCATTAGA TGCACCAGAT
GTAAGAGGTC AATCAAATGG ATGA
|
|---|
| Protein sequence | MFDSFRKKKS EPTVISDMLT KQRRYDSLVR ALHTDLFRYA YWLCGNRHIA EDITQETFLR
AWRSLDSLKD DKAAKAWLIT ILRRENARRF ERKQFDYSDV EQDTLEDHLS SSTEDKTEQY
WLRRQIGKLE MEYREPLLLQ LIGGFSGDEI ANLLELNRNT VMTRLFRARN QLKDALDAPD
VRGQSNG
|
|---|
| |