| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1512 |
|---|
| Symbol | |
|---|
| ID | 4017391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1759191 |
|---|
| End bp | 1759931 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637955522 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_562520 |
|---|
| Protein GI | 91792869 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGATA AAGATAAGAG AATTGGTCGA CAATCTGCTG AAAATACGAA ACAAACCCGT
AAAGATATCA TAGATGCGGC GACGCAATTA TTTTGTCAGC AGGGTTATGC TAAGGTGAGC
CTAAGAGCCA TTAGTGAGCA AGCCGGTGTG TCCCATGGGC TTATTCGACA TCACTTCGGC
ACCAAGTTTC AAGTGTGGCA GCAGGTTTGC GATCGCATCG AAGCGTATTT TCATCAATTC
GTATCGTCTC TCACTCAAGA ATTTTCTCCA GAGCTTGCCA GTAATGAACG ACTGTTTTAT
GTGATTATTA ATCTGCAAGC CGTGTTGATG TTAGATCCGC GTCCCATTCA GCTAATGGCC
GATTCAATGG GGCAAGATGC GCAAATGCAT GATTATATTT TTGATGACGA TGATGAGCTG
GCGACATTAA TCGCATCCAT GCTTAAGCAG TGTCATCAAG AAGGACTGGC AACAGAGTTG
GCAGTGAAAG AGCTTGAATG GTTAACCTGT GCCAGTGCTA ACAGTTTTGT GAGCCTAGCG
CCTTTAGCTA AAAATACCTA CCCAGGGTTA TCGTTTGAGC AAGTGCAGGT GAAGCATTGG
CGGTTATTTG CGCGCTCAAT ATGTGCGTTA TTAGAGTTAG ATATTGGCAT TATTCCTAAA
ATAGAGAACT TGGCGAGTTT TGTGGCTAAG AGTCAATTTA TCACGGACTT TAGTAACAAC
TTTGATTGTG AAACCCTGTA G
|
|---|
| Protein sequence | MPDKDKRIGR QSAENTKQTR KDIIDAATQL FCQQGYAKVS LRAISEQAGV SHGLIRHHFG
TKFQVWQQVC DRIEAYFHQF VSSLTQEFSP ELASNERLFY VIINLQAVLM LDPRPIQLMA
DSMGQDAQMH DYIFDDDDEL ATLIASMLKQ CHQEGLATEL AVKELEWLTC ASANSFVSLA
PLAKNTYPGL SFEQVQVKHW RLFARSICAL LELDIGIIPK IENLASFVAK SQFITDFSNN
FDCETL
|
|---|
| |