| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1507 |
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| Symbol | |
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| ID | 4017386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1749355 |
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| End bp | 1753230 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955517 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_562515 |
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| Protein GI | 91792864 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTTCGG ATACCCACCC CCTCTCAAAT GCGTTTCTTA GTCTGTGTTT TCAAACGGAT
GCCGCGAAAA TTCGCCGCCG TTTATTCAGG CTTAAAAAAG AGCCCGAGTC CGAGAAGAAA
TCTGCTGTAT TAGCTCAGCT TGAAGTCGCA GCCCGCGAAT CCTTCAATAA GGTGAAGCTT
AGGGACAATA AGCGCCCAAA AATTAGCTAC CCAGCTGAAC TTCCCGTGTC GCAAAAACGC
GATGAAATCG CCAAAGCCAT CGCCAATAAT CAAGTGGTGA TAGTGGCGGG GGAGACAGGC
TCAGGTAAAA CCACCCAGTT ACCTAAAATA TGCCTCGAAC TTGGCCTTGG GACTCGTGGG
TTAATTGGCC ATACCCAGCC TAGACGTTTG GCGGCCCGCA GCGTCGCGAG TCGCATTGCC
GATGAGCTTA ATTGCCCCTT GGGTGAAGCG GTGGGCTTTA AGGTGCGTTT TGCCGATGCC
ATTAGCCCAG ATTCCTACAT TAAATTAATG ACCGACGGTA TTTTACTGGC GGAATTAACC
TCGGATAAAT TCTTAAATCA ATACGATGCC ATCATCATAG ATGAGGCCCA TGAACGCAGC
CTCAATATCG ATTTTATTTT AGGTTATTTA AAGCAAGTAT TAAAAAAACG TCCTGATCTT
AAAGTGATTA TCACCTCGGC GACCATAGAC GTTGAGCGCT TCTCCCAGCA TTTTAATGGT
GCACCCATCA TAGAAGTCTC TGGAAGAACT TATCCGGTTG AAACCCGCTA TCGCCCCTTA
GTGCGTGATG AAGCGTCAGA CTTGGACTTC AGTGACGGTA TTTTTGCTGC TGTGGATGAG
TTAATCCAAG AAGGCCCTGG GGATATTCTT ATCTTCTTAA ATGGCGAGCG CGACATTCGT
GATACCGCCG ATATGCTCAG AAAACGTCAG TACCGCGACA CTGAAATTCT GCCCTTGTAT
GCCCGCCTTT CCTACGGTGA GCAATCAAAA GTCTTTAAAA GCCATATTGG CAGGCGCATA
GTGTTGGCCA CCAACGTGGC TGAAACCTCG TTAACTGTGC CCGGCATTCG CTATGTCATC
GATCCGGGTA CGGCGCGTAT TAGCCGCTAT AGCTACCGCA CTAAGGTGCA GCGTCTTCCC
ATAGAGCCCA TTTCACAAGC CAGCGCCAAT CAGCGTCAGG GCCGTTGTGG CCGTGTGGCG
GCGGGTATTT GTATTCGCCT CTATGATGAG CAAGACTTCC TATCGCGCCC AGCTTTTACC
GACCCGGAAA TCCTGCGCAC TAACTTGGCG TCGGTTATTT TACAAATGCT CGCCATAGGC
CTTGGTGACA TTGGCGGCTT TCCCTTTATT CAGCCGCCAG AGCAAAAACA CATACGTGAT
GGTTTCTTGC TGCTTGAAGA GCTGCAAGCC GTGCATCAAC ATAAAGGCGA CTTAGTCCTC
ACGCCACTTG GCCGCAATCT GGCCAGTATT CCGGTGGATC CCCGTCTTGG GCGTATGGTC
ATTGAAGCCA ATCAGCTGGG CTGCTTAAAT GAAGTGATAG TGATTGCCGC TGGCCTTTCT
ATTCAAGATC CAAGAGAGCG CCCAGCGGAG AAAAAACAAG CCAGTGATGA ATCTCATCGC
CGTTTTGCCG ATAAAGACTC AGATTTTGTC AGCTGGATAA ATCTGTGGAC CTATCTTAAA
ACTCAAAAGA ATTCACTTTC TGCGAGCCAA TTTAGAAAAC AGTGTCGTGA TGAATACTTA
GCCTACTTAA GGGTTAGAGA GTGGCAGGAT TTATTTTCTC AAATCAAACA AGCGGTCCAC
GACCTAAAAT GGCGCTTAAA TGAGGCGCCT GCCAATTATG AACAGGTGCA TAAAGCGGTA
CTTTCAGGGC TTTTAAGCCA AATTGGCTTC AAAGATGCCA ATAATGAATA CTTAGGGGCG
CGAAATCGTA AGTTTTTCGT GTTCCCAGGT TCGCCATTGG CTAAAAAAGG ACCAAAGTGG
ATCATGGCGG CTGAGCTTAC TGAAACCTCA CGCTTATTTG CCCGCTGCTG CGCCAAAATT
CAGCCAGAAT GGCTCGAATC CCTCGCGGGG CATTTAATTA AGAAGAGTCA TGTCGAGCCG
CATTTTGAAG CTAAGCCTGC CAGCGTTATC GCTTTTGAAA ACCAAGTGCT TTATGGGCTC
AATATCGTTA GCCGCCGCAA GGTGCAATAC GGGCCAATTG ATCCTGTTGA AGCCCGCGAA
ATATTTATTC GCAGCGCCTT AGCCGAAGGT CAATTACAGA CTCAAGAAGC CTTTTTTGTT
AATAACCAAG CCTTGGTTGA AGACATAGGT AATTTGGAGC ATAAATCACG GCGACGAGAC
ATCTTAGTGG ATGAACAAGT GCTGGTGGAT TTTTATGAAC CAAGGATCCC TGAGGGCATT
TACAATGGTC AGCTATTCTT TGGCTGGTGG AAAAAAGCCA AGCGTGACAC CCCGCAATTA
TTAGACTTTA ACCCTGAACT GTTAATGCAG CGCAGCGGCG CCCATATTTC TGCGCTGGAT
TTTCCCGATG TGTGGCATAA AGGCAATTTA GCCCTAGCCC TGAGCTACCA TTTTGAGCCT
GGCGCCGATG ACGATGGTGT CTCTGTGCAT GTGCCGGTGG CGCTACTTAA CCAAGTGGAT
GACACCGATT TTGATTGGTT AGTGCCAGGG CTTAGGGAAG AGAAATTTAT CGCCCTTATC
AAGTCATTGC CTAAGACATT AAGGCGTAAC TTTGTTCCAG CGCCGGATTA TGCCCGCGCC
TGTGCTCAGG CGATGGAGCC TTTCAGTGGC CCCGCGCTTG AGGTGATGTG TAAACAATTA
CTGCGCATGA GCGGCACTCG GGTCACGCCA GATGATTTTG ATTTAACCCA GTTAACCGCC
CATTTGTCGA TAAACTTCAA AATTGAAGAC GATAAAGGCA CGCTTATCGA GCAGGGGCGA
GTGCTGGATG ACTTAAAAGA TAAATTACAA GGTGTGGTCG CCAAGGCTAT TCGCCAAGTG
GCTAAAGTCG GAATTGAACA AGAAGCCCTG CTGAGCTGGA GTTTTGGTGA CTTGCCTAGT
CAATATCAAC AGCGTAAAGG TAACTATGAA GTCAAAGCCT ACCCTGCGCT AATCGACAAC
CAAGCGGATG TGTCCATCAA GTTATTCGAT GATGAGCATG AAGCCAAGCG GCATCACAGA
GTGGGCTTAA GGCGTTTGCT GCTGTTAAAT ATTCCTTCAC CTGTGAAGCA CTTACAGCAA
AAATTGCCCA ATAAAGCCAA ACTTGCGATG TACTTTAATC CCTTTGGCCA AGTGCAAATA
TTGATTGATG ACATCATAGC CGCCGCGGTG CAGCAACTCT TGGATGAGAA AAAACTGGAT
GTACGCAATG AAGCCCAGTT TGAGCAGGCT AAAGAGTGGG TTCGCCAAGA ACTTAACCCC
AGCGCCGAGC AAATCTCCCT TAAGGTTGAA CAAATTTTAA CCTTGTATCA GAACATCAAA
AAACGCATGA AAGGCAAGAT AAGCTTAGAT ATCGCGTTTG CCATGAGCGA CATTCAAACT
CAGCTCGATA AATTAGTGTT TAAAGGCTTT GTGGAAGACT GTGGCTGGCA GCGTTTGGGG
GATATTATTC GCTACCTTAA AGCCATTGAG AATCGCTTGG ATAAGCTGCC CGTGGATCCC
AGCCGTGATC GCTTGCATAT GCACAGTGTG GCCAAGGTGC AAGAGGCGCT TAATGCTCAG
CTCAATAAGT TACCTAAGTC ACAACCTGTG CCAGACAGTT TGGTTGAGGC GCGCTGGATG
GTGGAGGAGT ATCGGGTGTC CTGCTTTGCT CAAGTATTAG GAACTGCTTA TCCTATCTCA
GAAAAGCGGG TATTACAGCA TATAACCGCT ATTTAG
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| Protein sequence | MASDTHPLSN AFLSLCFQTD AAKIRRRLFR LKKEPESEKK SAVLAQLEVA ARESFNKVKL
RDNKRPKISY PAELPVSQKR DEIAKAIANN QVVIVAGETG SGKTTQLPKI CLELGLGTRG
LIGHTQPRRL AARSVASRIA DELNCPLGEA VGFKVRFADA ISPDSYIKLM TDGILLAELT
SDKFLNQYDA IIIDEAHERS LNIDFILGYL KQVLKKRPDL KVIITSATID VERFSQHFNG
APIIEVSGRT YPVETRYRPL VRDEASDLDF SDGIFAAVDE LIQEGPGDIL IFLNGERDIR
DTADMLRKRQ YRDTEILPLY ARLSYGEQSK VFKSHIGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SYRTKVQRLP IEPISQASAN QRQGRCGRVA AGICIRLYDE QDFLSRPAFT
DPEILRTNLA SVILQMLAIG LGDIGGFPFI QPPEQKHIRD GFLLLEELQA VHQHKGDLVL
TPLGRNLASI PVDPRLGRMV IEANQLGCLN EVIVIAAGLS IQDPRERPAE KKQASDESHR
RFADKDSDFV SWINLWTYLK TQKNSLSASQ FRKQCRDEYL AYLRVREWQD LFSQIKQAVH
DLKWRLNEAP ANYEQVHKAV LSGLLSQIGF KDANNEYLGA RNRKFFVFPG SPLAKKGPKW
IMAAELTETS RLFARCCAKI QPEWLESLAG HLIKKSHVEP HFEAKPASVI AFENQVLYGL
NIVSRRKVQY GPIDPVEARE IFIRSALAEG QLQTQEAFFV NNQALVEDIG NLEHKSRRRD
ILVDEQVLVD FYEPRIPEGI YNGQLFFGWW KKAKRDTPQL LDFNPELLMQ RSGAHISALD
FPDVWHKGNL ALALSYHFEP GADDDGVSVH VPVALLNQVD DTDFDWLVPG LREEKFIALI
KSLPKTLRRN FVPAPDYARA CAQAMEPFSG PALEVMCKQL LRMSGTRVTP DDFDLTQLTA
HLSINFKIED DKGTLIEQGR VLDDLKDKLQ GVVAKAIRQV AKVGIEQEAL LSWSFGDLPS
QYQQRKGNYE VKAYPALIDN QADVSIKLFD DEHEAKRHHR VGLRRLLLLN IPSPVKHLQQ
KLPNKAKLAM YFNPFGQVQI LIDDIIAAAV QQLLDEKKLD VRNEAQFEQA KEWVRQELNP
SAEQISLKVE QILTLYQNIK KRMKGKISLD IAFAMSDIQT QLDKLVFKGF VEDCGWQRLG
DIIRYLKAIE NRLDKLPVDP SRDRLHMHSV AKVQEALNAQ LNKLPKSQPV PDSLVEARWM
VEEYRVSCFA QVLGTAYPIS EKRVLQHITA I
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