| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1485 |
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| Symbol | |
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| ID | 4017254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1718286 |
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| End bp | 1723571 |
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| Gene Length | 5286 bp |
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| Protein Length | 1761 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955495 |
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| Product | ATPase |
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| Protein accession | YP_562493 |
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| Protein GI | 91792842 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0130947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTTC GTACTTCATA TTTGCTGGGC GCCATAGCTT GCGCCCTTGT TACCTTATCT
GCGGCCAACA TAAGCGTACC AGTTCACGCT GAGACATTGA AAATTACAGG CCCAAATGGT
GAAGTAAAAC AATCACCTAA GCGTCAGTAT GGCCCAACAA CTTCCGCCGA TACCTTCTGG
AGCATAGCCC AGAAGTTGCG TCCCAATGAA AACATCAGCG TTTATCAAGT GATGGCAGCG
CTATATGATG CCAATCCCCA TGCCTTTAGC GGCAATAATT ACAACACCTT AGAACGTGGA
ATGATCTTAT TAGTGCCATC GGAACAAGTG ATGGCAGGGA TCCCTCAGCG TTTAGCGAAA
GAACGTGCCG ACCGGGACGA TCAACGTTTT CAGACTCCTG CCAAAGCTGT GGTTCGAGCG
CCAGTCACCC CTTCTAGAAC ATTGCAAATT GTCCCAGATA GCAAGCCTGC GGTTGTTGCT
GCCAAGCCAA GTGTGGACAT GGTTGAAAAA CGCATTGCCG ATGAACTTAA AATCAAGCTA
GAAGCAGCTG AGCACAAAAT ATTGATGCTC ACCGAAGAGC TTGGCCGTGC CCAAGATGAG
CTTGTCGTCA AGGCAGGCGA CAGCAAGGCA TTGACAACAA AACTTGAAGA GTTGTCCTTA
CAAGTGTCAA GTCTAGAAGA AGACTTTTAT CAGCTTAATG AAAAAAATCA AACACTAAAG
GCAAGTTATC AACAATTGAT TGAAGACACT ACTGAAGTGG AAGCCCCAGT GGTGGAAGAA
GCACCGGATG ATTTTTGGCG CAATTTAACA GACAGCACCC TAATGCTAGT GCTAATGGCT
GCGCTGCCAT TATTATTGAT ATTCCTTATT CTGTTCTTGC TAATGCGTCG CAGCAGCAAG
AAGAAAATGC AAACCGAGGT GGCAGCGGCC GCTGCGATTG CCGCAGGAGC CAGTGCTGCT
GCGATGGCGG ATATGCTGGC TGAAGACGAA CATGACATTG AAGGGGACGA AGGAGATCAA
GCCGTGCACT TGGATGTGGA AGAGGCCGAT TCTCTGGATG ACTTACTGGA TCTAAGCAGT
ATCGATCTTC AGCCTGAAGT GGAAATGGGC AGTGACGCTG AAATGGATAT GGCGTCCGAA
ATGTTCATCG CCGAAGACAG CGCCAAAGAA GAGGAAGGCA CTTCTTTGGA CGATCTTTGG
GCTGAAGCAA TGGAAGAGCA AGAAGATGAG CTTGAACCGC TCAAACCTGA TGATGACGAT
CTTGATAGCT TCTTTGCTAA TTTAGAGGAA GAAACACCTG CTGAGGCTGA CGTGGCCGAA
AGTGCAAGTG ATCTCGATGA TATCGATGCC GTATTATCTG AATTTGCCGC CGATGAAGTA
GAACCACCTC AACTGGAGTC AGACGATGAC GACATAGATG CCATGTTGGC AGCCTTTGGC
ACTGGAGATG ACAAACCCTC CAGCCAAGAT GATGCTCAGG TAGAAGCTGC AGATGACGAT
ATAGATGCCA TGCTTGCCGA GTTTAACATA GGCAAAGAAG ACAGCGTCTC TACTGAAGTG
ACTGCGGTCG AAGAAGAATC TGAGTCAGTT GATGACATAG ATGCCATGCT GGCCGAGTTT
AATACGGGCA AATCAGACAG TCTTTCCACT GAAGAGACTG CAGCTGAAGA TATAGCAGCT
GAAGATATAG CAGCTGAAGA TATAGCAGCT GAAGATACTG CAGCAGAACC ACAAGCCGAG
CCTGCCGATG ATGATATTGA TGCCATGCTG GCCGAGTTTA ATACGGGCAA AGCAGACAGC
ATCTCAACTG AAGAGACAGC AGCTGAAGAT ATAGCAGCAG AACCACAAGC CGAGCCTGCC
GATGATGACA TCGATGCCAT GTTGGCCGCG TTCGATGCGA AAAAAGAGGA TGCAGAAACA
GACAGTGACC TAGAAGCTGT TAACGATGCG CCAGAAAATG AACTCGCTGT CGATGAGATA
GATTCATTAT TAGCCGAAAT TGAAACGACC CCAGAAGAAT TGGAAGCCGA TGCTATAGCA
GCTGAGCTTG ATGAAGAGCT TGCAGCTGAA CCTCAAGCCG AACCTGCCGA TGATGACATA
GATGCCATGT TGGTGGCTTT CGATTCAAAA AAAGATGATG ATGCAGAAGT CACAGACAGT
GAAGTGAACG CTGTCAGCGA AGCACCACTC AATGAGAAAG CTGTCGATGA GATAGATTCA
TTGTTAGCTG AAATTGAAAC GACCCCAGAA GAACTGGAAG CCGATGCTAT AGCAGCTGAG
CTAGATGAAG AGCTGGCTCT TAGCGCTGAC ACTGGAGCGG ACACTGAGGC ATCGGATACA
GATATCGATT CATTGTTATC TGAGCTCGAG AAGACCCCTG AAGAAATCGA AGCCGAAGCC
ATAGCCGCAG AGCTTGCCGC CGAACTTGAG TCTGACTCAG ATCTGGGCTT AGGGTTAAAC
ACAAATGAAA ACACTGACTC AGAAATAGCA CAAGACGCGA GCGCAGAGCC GCAAAGCGAG
CCATCGGATG ATGATATAAA TTCATTATTA TCTGAGCTCG AGAAGACCCC TGAGGAAATA
GAAGCCGAAG CCGTAGCCGC AGAGCTTGCC GCCGAACTTG AATCTGACTC AGATCTGAGC
TTAGGGTTAA ACACAAATGA AAACACTGAC TCAGAAATAG TACAAGACGC GAGCGCAGAG
CCGCAAAGCG AGCCATCGGA TGATGAGATA AATTCATTAC TGGCCGAGAT TGAAACGACC
CCAGAAGAGC TGGAAGCCGA TGCCATAGCA GCAGAGTTGG ATGAAGAGCT GTCCCTTAGC
GCTGACACTG ATGCGGACGA TGAGATATTG GATACGAATA TCGATTCATT GTTATCTGAG
CTTGAGAAGA CCCCAGAGGA AATAGCAGCC GAAGCCATAG CCACAGAACT TGAACCAGAA
TTAGAACAAG AACCAGAGCT TGAACCAGAA CTCAACTTGG AACCCGAGTC TGCGCCAGAC
ACAAGTGCAG AGCAGCAAAA TGAGCCCGCG GATGGGGATC TGGATTCATT GCTAGCTGAG
TTTGAATCTG ATGCCCCAAC TATCGATACC CAAGCGTTAG CAGAGGATGA GCAGGGTGAA
CTCACCGATG CCATCAGTGC AGAGCCTGAC ACAGATCAAA CTGCTGAAGT GACTGATAGC
CCAGCCGCAA GAGAAGACGA TTTCGATACC TCATTCGCTG GACCCGAGTC TGAAGGCGAA
GCCGAAGTCG AAACTGAAGC CGAAGCAGAA GTAGAAGCTG AAGTAGAAAC TGAAGTAGAA
GCTGAAGTAG AAGCTGAAGT AGAAGCAGAA GTAGAAGCTG AAGTAGAAGC AGAAGTAGAA
GCAGAAGTAG AAGCAGAAGT AGAAGCAGAA ACTGAAACTG AAGCAGAGAT TGAACCTGAA
GGTGAAACTC AAGCCGAAGC AGAAGCCGAA GCAGAAGCAG AAGTAGAAGC TGAAGTAGAA
ACTGAAGTAG AAACTGAAGT AGAAACTGAA GTGGAAGCTG AAGTAGAAGC AGAAGTAGAA
GCAGAAGTAG AAGTAGAAGC TGAAGTAGAA GCTGAAGTAG AAGCAGAAGT AGAAGCAGAA
ACTGAAGCAG AGATTGAACC TGAAGGTGAA ACTCAAGCCG AAGCAGAAGC CGAAGCAGAA
GTCGAGACTG AAGCTGACAC TGAAGCTGAC ACTGAAGCTG GCTTAGACGT CGAAACTGAA
GCTGAAATAG AATCGGAAGC TATTGCAGAT CTTGATTCAG AGATGTCTCC CGAAATAGAA
GCCGACCTAG AGCTTGAAAC CGATGAGTTA GCGCTTGAGG AGTTTCAATC CAGTGAGCCA
GAGCAAGTCG CAGCAACGAC TGATGAAGAT GCGTTAGCAG CTTCAGAAAC GAGTACCCTC
AGTGACAGCG ACTTTGATAC AGACGATGAT GAAGAAAGTC TTGATATCGA TACCGACGAG
CTTGATGCCC TATTAGGACA GTTAAATCAT GCTCAAACCT TGGCGGATGC CGGCGCGGTT
GAAACTGAAG TTGAAGCTGA AGGTGACGCT GCACTTGGAA CAAACGAGCT TGAGCCAGAA
CTGGTTGAAA CCGCCGATAC AGAGCTTGAG CAAGATGCAC TTGAGCCAAT CGAACTAGAA
TCCGAAGCTG CCACTGAACT AGAACTAGAA CTAGAACCAG AATCACAGCT TGAACCTATG
GCAGAAGATC TCGCCATGGT ACCTGAGCAG GAACCTGAGA TTGAACCAGA ACCTGAGATT
GAGTCAGAGC CAGAACCTAG GACAGAAGCG CCTGAGTTAC AACTGGAACC TGAGGTAGAG
CAAACACCAG AAGCCCCCAG TACAGAAGAT GAGTCGTCAT TAACACTGGA TGATGACGAC
CTTTTTAGCA CTGAAAATAA CGATGAAGTA GAAGATATAG ATTTCTCGTT ACTCGATGAT
GAGGATGAAG ACCTTGACGT AAGTGACGCT AAGCCTGCTG CTGTGTTTGA TGAAGCTAAA
GCCGATGCAG AGCTCGCAGC CCTATTGGCC AGTATGAATG ATACTCAGGA TGAGGACTTT
ATCTTTGAAG ATGATGAACC AACCGATCTT GATGTTAGTG CTGAGCCAAA ACAGCAGAGT
TCACCACAGG CATCAGCGGC GGAGAAAGCC AAGGAAAATA GCTTTTTTAA TGATTTAAAA
GCCAATAAGA AACCTGAACC GGCCCCTTTA GAGTGGGATC TTGGCACTAC GGCCGACTCA
AGTTCATCAA AGCCTGAAGT TGAAGACAAT CAAGCTGACG ACCCAGATTT TAATGATGAT
AACCTGCTGG CAGCCTTCGC TGAGAATGTG GCATCGAGCG GTGAGGAAGA AATCTTCAGT
GTTGAAGACG ACTTTGAAAT CACAGATGAA AATTTAACCG TCGAAGAAGC ATTGGCGGCG
TTGGATGCGG ATGAGCATGT AGACTTATTA AATGAGGATT CATTGGCCAC GTTCGAAGTG
GAAAATGGCT ATATTGATAT TAATAAGTTA CTCAATGATG CCGATGAAGG CGGTGACAGC
AGCGATCAAT ATAAAGATAT TGACGTGAGC ATGGATGATG ATGAAATAAG CTCCTTGATT
GGTAACACTT CAATGATAGA TGTGGATGAT GAAGAGAATT CGGTCAATGC TAAACTTGAT
TTAGCAAGGG CCTATATCGA AATTGAAGAT GCCGATAGTG CCAAGGCGCT ATTAAAAGAG
GTGCAGTTAG ATGGCAACGA CAGACAAAAA TCTGAGGCTG CCAGTTTGAT TAAGGGCTTG
AGGTAA
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| Protein sequence | MIFRTSYLLG AIACALVTLS AANISVPVHA ETLKITGPNG EVKQSPKRQY GPTTSADTFW
SIAQKLRPNE NISVYQVMAA LYDANPHAFS GNNYNTLERG MILLVPSEQV MAGIPQRLAK
ERADRDDQRF QTPAKAVVRA PVTPSRTLQI VPDSKPAVVA AKPSVDMVEK RIADELKIKL
EAAEHKILML TEELGRAQDE LVVKAGDSKA LTTKLEELSL QVSSLEEDFY QLNEKNQTLK
ASYQQLIEDT TEVEAPVVEE APDDFWRNLT DSTLMLVLMA ALPLLLIFLI LFLLMRRSSK
KKMQTEVAAA AAIAAGASAA AMADMLAEDE HDIEGDEGDQ AVHLDVEEAD SLDDLLDLSS
IDLQPEVEMG SDAEMDMASE MFIAEDSAKE EEGTSLDDLW AEAMEEQEDE LEPLKPDDDD
LDSFFANLEE ETPAEADVAE SASDLDDIDA VLSEFAADEV EPPQLESDDD DIDAMLAAFG
TGDDKPSSQD DAQVEAADDD IDAMLAEFNI GKEDSVSTEV TAVEEESESV DDIDAMLAEF
NTGKSDSLST EETAAEDIAA EDIAAEDIAA EDTAAEPQAE PADDDIDAML AEFNTGKADS
ISTEETAAED IAAEPQAEPA DDDIDAMLAA FDAKKEDAET DSDLEAVNDA PENELAVDEI
DSLLAEIETT PEELEADAIA AELDEELAAE PQAEPADDDI DAMLVAFDSK KDDDAEVTDS
EVNAVSEAPL NEKAVDEIDS LLAEIETTPE ELEADAIAAE LDEELALSAD TGADTEASDT
DIDSLLSELE KTPEEIEAEA IAAELAAELE SDSDLGLGLN TNENTDSEIA QDASAEPQSE
PSDDDINSLL SELEKTPEEI EAEAVAAELA AELESDSDLS LGLNTNENTD SEIVQDASAE
PQSEPSDDEI NSLLAEIETT PEELEADAIA AELDEELSLS ADTDADDEIL DTNIDSLLSE
LEKTPEEIAA EAIATELEPE LEQEPELEPE LNLEPESAPD TSAEQQNEPA DGDLDSLLAE
FESDAPTIDT QALAEDEQGE LTDAISAEPD TDQTAEVTDS PAAREDDFDT SFAGPESEGE
AEVETEAEAE VEAEVETEVE AEVEAEVEAE VEAEVEAEVE AEVEAEVEAE TETEAEIEPE
GETQAEAEAE AEAEVEAEVE TEVETEVETE VEAEVEAEVE AEVEVEAEVE AEVEAEVEAE
TEAEIEPEGE TQAEAEAEAE VETEADTEAD TEAGLDVETE AEIESEAIAD LDSEMSPEIE
ADLELETDEL ALEEFQSSEP EQVAATTDED ALAASETSTL SDSDFDTDDD EESLDIDTDE
LDALLGQLNH AQTLADAGAV ETEVEAEGDA ALGTNELEPE LVETADTELE QDALEPIELE
SEAATELELE LEPESQLEPM AEDLAMVPEQ EPEIEPEPEI ESEPEPRTEA PELQLEPEVE
QTPEAPSTED ESSLTLDDDD LFSTENNDEV EDIDFSLLDD EDEDLDVSDA KPAAVFDEAK
ADAELAALLA SMNDTQDEDF IFEDDEPTDL DVSAEPKQQS SPQASAAEKA KENSFFNDLK
ANKKPEPAPL EWDLGTTADS SSSKPEVEDN QADDPDFNDD NLLAAFAENV ASSGEEEIFS
VEDDFEITDE NLTVEEALAA LDADEHVDLL NEDSLATFEV ENGYIDINKL LNDADEGGDS
SDQYKDIDVS MDDDEISSLI GNTSMIDVDD EENSVNAKLD LARAYIEIED ADSAKALLKE
VQLDGNDRQK SEAASLIKGL R
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