Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1445 |
Symbol | |
ID | 4017754 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | - |
Start bp | 1682820 |
End bp | 1685297 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637955455 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_562453 |
Protein GI | 91792802 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000476077 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTCGT TACGTTTATC TCTACTTGCT CTTGCTTGCC ATAGCGCACT GTTTGCCGTT ACTGCCAGTG CTCACACTAC TATCCTCGCC TCACAAACGT CAGCCACGTC TGAGGCACAG ACTAATAAGG CCCGTGATAA CAAGGATGTT GAGCGTATAA CCGTCTATGG AAGACAAAAC CAAGTGGTGA TGAATTCAGG CCTTGCCACC AAGTCTGATA TGTCATTGAT GGAAACCCCA GCGGCAGTTG TGATTGTCGA TGAGGCGCTT TTCGATGCAC AAGGCTTAAG CAATATGCAA GACTTGGTAC GTAATATCAG CGGCGTAACT CAAGCTGGCA ACAACTATGG CATAGGCGAT AACCTAGTGG TACGCGGCCT AGGCGCTAAC TATACCTATG ACGGCATGTA TGGCGGCGCA GGCTTAGGCA ACACCTTTAA CCCGACACGC TCACTGGCAA ACGTGAGCTC GGTTGAAGTG TTAAAAGGCC CAGCAACCGG CCTTTATGGC ATGGGTAGCG CCGGTGGCGT TATTAACCTC ATTGAGAAAA AACCAGAATT TACTAGCCAA CATGAGTTTG AGCTGGAGCT AGGTCAGTGG GACAGCTATT CAATGCTTGC CGACAGTACT GGCGCTATTA GCGATGATTT AGCCTATCGT GTTGTCGCTA AAAGCGCCCG CAGTGACGGT TACCGTGACA TGGGCACCGA CAGAGATGAA GTTTACGGCT CATTAAAGTT TTTGATTAAT GATGACCAAA ACATCATGTT ATCAGCCGCC TACATTAAAG ATGCTATCCC AGTAGACTCT ATCGGCCACC CCATCCGTAT TTATAATGCT GAGTCAGTCA ATGGCAAAAC TGCGGGAGAA GCCACCTGGC AAGACCTAGT CAATGACCCC GGTAGCAAAG GCATACAGCT TACAGATCTT CAGCGTCAAG AATTGGCAAA CTCCTTAAGT TCAAGCGATG GCCTAACTCC TTATACTTTC GGACACAAGG GCTTAATCTC CCCAATGGCC AAAGCCAACG AAGGCGAGGA GCTGCGTCTT AAGCTGACTC ACAATATCTA CTTAAGCGAC AATCTGCATT TAAATCAGCA GCTGCAATAC CGTAACTATG ACACCGGCTT TGCTCGCCAA ACGGGTGCCT ATAACTATGT GTACTGGGAA CAAAGCGAGG GTATCAATGT TGCTCCTCGT GCGCCGCTGC TAGAAGATGG CAAGTTATAC CCCTTTGCCG CTCGCCGTCA GGAATACCGT AAAGCCAGCG CAGATGAAAA ATCATGGCAG TACTTTGCTG ATTTACGCTA CGACTTCGAA CTTGCAGGCA TAGACAATGA ACTGTTAATG AATGCAAATT TTGAAGACAG AAGCATACGC TCACAGCAAT ATTCAATCTG GGATAAAGAC TACATAATCA AAGATAAAAA AGGCCAGCTG CTGTATCAAG GCAGCCTACC CTACATCTAT GATATCCGTA ACCCTAACTG GGGCACGGGA CAATTTGAGG ATTACGATCC GCTGCGTACT AGTAACTACG ACAAAGCCAT CAGTGCTTGG GGCTTAGGCG TTCAACACGT AGGTTACTTA GGCAATGGTT TTACCAGCCG TATCGGAGTC GCGTTTAATG AAATCAAGCA AGCTTACGAG CATTTAGGTG TCGATGCCCG CTACAGCGCA AGTCGCGCAG AGCCAACGCA ACTGGCTGAT ACCACAGATA ACGGCATGAC CTATAACTTA GGCTTAACCT ATATGCCAAC CGATGATTTA TCTTTCTTCA TCAACCATGC AAAAGGCCGT ACGGCCTACA GTGTGCTTGG TGATATTAAG GGCGATCAAA GCGACAGAGA AGATTCTGAG TCAGTCAGCA AAGATTTTGG CATAAGAGCC AAAGGGTTTG ACGATCAATT ACTGGCCTCA TTAATTTTCT TTAAAACGTC ACGTACTAAC TTGCAATACG GCAATCCACT CTATAATTCT GACGTGTCTG GCCCTGAAGT ACCACAGTAT TTCAATAACG GCAGTGAAGA CACTGAAGGT GTAGAGCTTG ATATCAACGC CACTCTTAAC CAGCAATGGA CAATCAATGT CAATGCTGTC TACCAAGACG CCAGAGATAA CCAAGACCCA AGCCGAAGTG ATGCAAATCA ACGTCAAAAA GGCGTGCCAT ACGTCACCGC TGGCATGTGG GCAAGCTACG CCGCTGACTT TGGCTTACGT GAGCCTATTT CCCTTAGTTT AGGCGGAAAG TACGTCGGCG AGCGCAGCAC ACACTCAAGC CGATTCGGTA TTCCAGACGG CCATGTGCCA AGTTATGCCG TTATGGACTC AGCCATCAGC TATGATGCCC AAGACTATAA GATCCAGTTA AACATTAACA ACTTGTTTAA TAAGGTCTAT TATGAGAAAG CTATGTTCCT GGGCGGCATG CCAGGGGAAG AGCGTAACGC TAAGCTAACC TTAACTTACC GTCTGTAA
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Protein sequence | MKSLRLSLLA LACHSALFAV TASAHTTILA SQTSATSEAQ TNKARDNKDV ERITVYGRQN QVVMNSGLAT KSDMSLMETP AAVVIVDEAL FDAQGLSNMQ DLVRNISGVT QAGNNYGIGD NLVVRGLGAN YTYDGMYGGA GLGNTFNPTR SLANVSSVEV LKGPATGLYG MGSAGGVINL IEKKPEFTSQ HEFELELGQW DSYSMLADST GAISDDLAYR VVAKSARSDG YRDMGTDRDE VYGSLKFLIN DDQNIMLSAA YIKDAIPVDS IGHPIRIYNA ESVNGKTAGE ATWQDLVNDP GSKGIQLTDL QRQELANSLS SSDGLTPYTF GHKGLISPMA KANEGEELRL KLTHNIYLSD NLHLNQQLQY RNYDTGFARQ TGAYNYVYWE QSEGINVAPR APLLEDGKLY PFAARRQEYR KASADEKSWQ YFADLRYDFE LAGIDNELLM NANFEDRSIR SQQYSIWDKD YIIKDKKGQL LYQGSLPYIY DIRNPNWGTG QFEDYDPLRT SNYDKAISAW GLGVQHVGYL GNGFTSRIGV AFNEIKQAYE HLGVDARYSA SRAEPTQLAD TTDNGMTYNL GLTYMPTDDL SFFINHAKGR TAYSVLGDIK GDQSDREDSE SVSKDFGIRA KGFDDQLLAS LIFFKTSRTN LQYGNPLYNS DVSGPEVPQY FNNGSEDTEG VELDINATLN QQWTINVNAV YQDARDNQDP SRSDANQRQK GVPYVTAGMW ASYAADFGLR EPISLSLGGK YVGERSTHSS RFGIPDGHVP SYAVMDSAIS YDAQDYKIQL NINNLFNKVY YEKAMFLGGM PGEERNAKLT LTYRL
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