Gene Sden_1440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1440 
Symbol 
ID4017432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp1679496 
End bp1680125 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content44% 
IMG OID637955451 
Producthelix-turn-helix, AraC type 
Protein accessionYP_562449 
Protein GI91792798 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAGATA GCTTAAACAG CAGGAAGGCT AAAATTATTA GCCAAGTCGG GCAGTATATT 
TATGACCATA GCGATCAAAC TATCAGCTTA GATGCCCTGG CAAGTTATAG CGGCTTTTCT 
AAGTACCACT TTAATCGCAT ATTTTTTGCG GCGACGGGGT ACCAATTAGG TGAGTTTATT 
CAGCGGCATA AATTGGATAA GGCACTGCAG TTAATCAAAC AGGGAAACCA CAATATTATC 
GATGTTGCTA TTAGCGTCGG CTATGATTCC CCTTCCTCTT TTTCTAGGGC GTTTAAAAAG 
AACTTCTCTG TTACCCCAAG CGAAGTAGTT CAAGGTAATT TGCCGAACAA TGTGCGGGTT 
GGCAGCTTAA CACCTAGAAA ACGATTAACT GAGCAGAAAT TGCAACCTGT TTGGAAAACC 
TTGCCTGAGC GACAAGTGTA CGGCTTGTAT GGCAAAGGTT TTAATGAGCA ATCTTTCTCC 
CAAGTGGCAG GTGAATTATA CGGCCGTCTA GCCGCTATGG CTGAGCCGTT ACGTTACGCT 
GAGTTGCAGC CTATTGGTGT TTCTGTTGAT AACCCCTGGT CGATAGAGCA AACTGAAAGC 
CGTTTTTTGC AGTGCAGAAG CCTTTTCTAG
 
Protein sequence
MVDSLNSRKA KIISQVGQYI YDHSDQTISL DALASYSGFS KYHFNRIFFA ATGYQLGEFI 
QRHKLDKALQ LIKQGNHNII DVAISVGYDS PSSFSRAFKK NFSVTPSEVV QGNLPNNVRV 
GSLTPRKRLT EQKLQPVWKT LPERQVYGLY GKGFNEQSFS QVAGELYGRL AAMAEPLRYA 
ELQPIGVSVD NPWSIEQTES RFLQCRSLF