| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1404 |
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| Symbol | secF |
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| ID | 4017341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1637169 |
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| End bp | 1638116 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955412 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_562413 |
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| Protein GI | 91792762 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0316508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCAGT TATTTGCAGT AAAGGATGCG GTCGACTTCC TGCGCCATGC TAAGCCTATT
AGCATAATGT CGATGATTTT AGTGATTGCC TCTTTTGTGT CCTTAGGCAC CCAGGGTATC
AATTGGGGGT TAGATTTCAC CGGCGGCACT GTGGTAGAAC TTGAGTTCTC AAAGCCTGCA
GACCTTAGCC AATTACGTGG CACTTTGACG TCAGTTGAGG CTCAAGGCGC TGTGGTGCAA
AACTTCGGTT CGAGTCACGA CGTATTAGTG CGTTTGCCAG TAAAGCTTGA TATAAAAAGT
GACCTACAAG TCAAAGCCAT CATGGATGGC GCTTTGAGTT TAGATGCTGA TGTTATCCAA
AAACGCGTAG AGTTTGTTGG TCCGCAAGTG GGTAAGCAAT TAGCGGAGCA AGGCGGCTTA
GCCGTGATTG TGGCGCTTAT TTGTATTCTT ATTTACGTGT CATTTCGTTT CGAGTGGCGC
TTAGCCATGG GCTCAGTCGC GGCTTTGGCG CACGATGTTA TCGTGACCTT AGGCGTGTTT
TCTGTGTTGC AGCTTGAATT CGACTTGACC GTACTTGCTG GCCTACTCAC GGTTATCGGT
TATTCACTTA ACGATACTAT CGTAGTGTAT GACCGCATCC GTGAGAATTT CCTTAAGATG
CGTAAAGGCG GGCCAATTGA AGTGGTGAAT ACTTCAATTA CGCAGACCAT GAGCCGTACA
GTGATCACCA CAGGCACTAC GTTAGTCGTG GTTGCTGCTT TATTTATTAA GGGCGGCAGC
ATGATCCACG GTTTTGCGAC AGCATTGCTA CTGGGGATCT TCGTGGGTAC TTACTCATCG
ATTTACGTTG CTAGTTATTT GGCCATTAAA CTCGGAATTT GCCGCGAGCA CATGTTACCA
GTGGAAATCG AGAAAGAAGG CGCCGATCAG CCTTCAATGA TGCCATAA
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| Protein sequence | MFQLFAVKDA VDFLRHAKPI SIMSMILVIA SFVSLGTQGI NWGLDFTGGT VVELEFSKPA
DLSQLRGTLT SVEAQGAVVQ NFGSSHDVLV RLPVKLDIKS DLQVKAIMDG ALSLDADVIQ
KRVEFVGPQV GKQLAEQGGL AVIVALICIL IYVSFRFEWR LAMGSVAALA HDVIVTLGVF
SVLQLEFDLT VLAGLLTVIG YSLNDTIVVY DRIRENFLKM RKGGPIEVVN TSITQTMSRT
VITTGTTLVV VAALFIKGGS MIHGFATALL LGIFVGTYSS IYVASYLAIK LGICREHMLP
VEIEKEGADQ PSMMP
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