| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1392 |
|---|
| Symbol | |
|---|
| ID | 4017355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1623244 |
|---|
| End bp | 1623672 |
|---|
| Gene Length | 429 bp |
|---|
| Protein Length | 142 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637955394 |
|---|
| Product | biopolymer transport protein ExbD/TolR |
|---|
| Protein accession | YP_562401 |
|---|
| Protein GI | 91792750 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02801] TolR protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000255119 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAGC GTAAACGTCG CCGTCCGGTT GCTGAAATTA ACGTTGTTCC TTATATCGAC
GTGATGTTGG TGCTATTAAT CATCTTTATG GTGACAGCAC CTATTGTGTC TCAAGGCGTT
AAAGTTGATT TACCTCAAGG TTCGGCTGAG CCTTTACCAC AAGACAGTAA GCCTCCGATT
GTGGCATCTA TCGATGCCGC GGGAGATTAT TTTGTTAATA TTGGTGAAGG CTCTAACAGC
CAAATAATGG ATTTGACAGA GGTAACCCAA GAGGTTGCTG CAGCATTGCT CATTGCGCCA
GAAAGGCCAG TCGTCGTAAA AGGTGATAGA AGTATTCCCT ACGAAAAAGT AATCCAACTC
ATGGTCAGTT TGCAAAAAGC AGGGGTACCA TCGGTGGGCT TGATGACTGA TTCATTTGAG
GAGAACTAG
|
|---|
| Protein sequence | MYQRKRRRPV AEINVVPYID VMLVLLIIFM VTAPIVSQGV KVDLPQGSAE PLPQDSKPPI
VASIDAAGDY FVNIGEGSNS QIMDLTEVTQ EVAAALLIAP ERPVVVKGDR SIPYEKVIQL
MVSLQKAGVP SVGLMTDSFE EN
|
|---|
| |