Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1362 |
Symbol | |
ID | 4017609 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1582533 |
End bp | 1584554 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637955359 |
Product | choline/carnitine/betaine transport |
Protein accession | YP_562371 |
Protein GI | 91792720 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000623924 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCTTCA AGTCAAGTAT TAACCCCGCA GTGTTTTTCT CATCGGTAAT TTTAATTACC CTTATGGTGT TTCTGTGTGC CCTTTGGCCA CAAGAGGCGA GTCATTTCTT TAAGTCAGTG CAAGGCGGCT TAGAAGCAAA AGCGGGATGG TTGTATATTT TAGCCGTGGC CATTTTCTTG TTGTTTATTT TGTTTGTGAT GATGAGCCGT TTTGGTGACA TTAAGCTTGG GCCAGATCAT GCCGTGCCGG ATTACAGCTA TAAGAGCTGG ATAGCCATGC TGTTTTCTGC CGGTATGGGC ATAGGTTTGA TGTTTTTTGG TGTGGCAGAG CCCGTGATGC ATTATTTAGC GCCGCCAGAT GCGACGCCTG AGACCATTGC CGCGGCAAAA GATGCCATGC GGATCACGTT TTTCCATTGG GGGCTCCATG CCTGGGCGAT TTATGCCGTG GTGGCCTTAA GCTTGGCGTA TTTCTCCTAT CGGCATAAGT TGCCGCTATT ACCCCGCTCG TCTTTATATC CCCTGATAGG CGAGCGCATC TATGGTCCCA TAGGTCATGC TGTCGACACC TTTGCCGTAT TAGGTACCAT GTTCGGCATC GCCACTTCCC TAGGGTTTGG TGTGCTACAG GTCAACTCTG GCTTAAGTTA CTTGATTGAT GGTTTTCCAA ATAATGCTTG GATGCAGGTG GGCTTGATTG CCATCATTAC CGCCATCGCG ACCTTGTCTG TATTTTCAGG CTTAGACAAA GGGGTTAAGC GTTTAAGCGA GCTAAACCTA GGTTTAGCTT GTCTCTTGAT GCTAGCTGTC TTATTACTTG GGCCAACCGT GGTCTTGTTG CAAGCCTTCG TGCAGAACAC CGGCAGTTAC TTAAGTGAGT TAGTGGGTAA AACCTTCAAC CTTTATGCCT ACCAACACAA GGAAGATTGG ATTGGTGGCT GGACCTTGCT CTACTGGGGC TGGTGGATTT CATGGTCCCC TTTTGTGGGC ACCTTTATCG CAAAGGTCAG TCGTGGTCGC ACCATTCGTG AGTTTCTCAT CGGGGTTTTG TTTGTTCCAA GCGCCATAAC TTTCCTGTGG ATGACTGTTT TTGGCAATAG CGCCATCGAT GCCATCATGA ACCATGGGGC GAGTTATTTG GCAGAGGCTG TGTCCACCGA CGTGTCAGTC GCCTTGTTCA AGTTTTTTGA ACACTTACCA TTTTCTAATT TATTGTCCGT GATAGCCCTT TGTTTAGTGG TGACTTTCTT TGTGACGTCA TCGGACTCAG GTTCTTTAGT GATAGATAAC CTCACTTCAG GCGGCGATGA TAATGCTCCT GTGTGGCAGA GGATTTTTTG GGCGGTATTG GAAGGGGCGG TTGCAGCAGT ATTACTGCTG GCAGGTGGTT TACAGGCCTT GCAAACGGCT GCTATTGCCA GTGCCATGCC CTTTCTACTT GTGATGCTAT TGATGTGTTT AGGTTTATAT CATGCACTTA AAGACGACTG GCTTAAACTC AGTAATGTGC AGTCACACAA TACCAGTGTC CAGTACGCGA CAACCAATAT GAGCTGGCAA GACAGAATAG GGGTACTCGT CTCCCAACCT AGCCACAGCG AGGCCAAGGC ATTTATTGAA ACCGTGGTAG AGCCGGCTTT GCTAGAGGTG AAAACTATCT TTGTCTCTAA AGGGTTAGCT GCACAGATAA TCCACCTCGA TGGCCGTGTA AGGCTGATTA TTGGTCCCGA TGAACGGCTC CCGTTTGTCT ATGGCCTCTG GACTCGCGCA TTTGTGACTG CAGCTTCAAC TGAAAGCGGC GCTGAGCAAG CTAACGACAC TGAGATTGCA ACAGAACGAA CAGCAGCTGA AACGCCGAAT GCCACTGAGA GTGCGTATTA CCGCGTCGAA GTTTTCTTGG AGCATGGTGG ACAGCAGTAC GATGTGATGG GCTATACCCA AGAGCAAATT ATTGCCGATA TTGTCAGTCA ATATGAAAGA TATTTGCACT ATCTGCATTT ATCTAATGCA GAGCTTGCAT AA
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Protein sequence | MPFKSSINPA VFFSSVILIT LMVFLCALWP QEASHFFKSV QGGLEAKAGW LYILAVAIFL LFILFVMMSR FGDIKLGPDH AVPDYSYKSW IAMLFSAGMG IGLMFFGVAE PVMHYLAPPD ATPETIAAAK DAMRITFFHW GLHAWAIYAV VALSLAYFSY RHKLPLLPRS SLYPLIGERI YGPIGHAVDT FAVLGTMFGI ATSLGFGVLQ VNSGLSYLID GFPNNAWMQV GLIAIITAIA TLSVFSGLDK GVKRLSELNL GLACLLMLAV LLLGPTVVLL QAFVQNTGSY LSELVGKTFN LYAYQHKEDW IGGWTLLYWG WWISWSPFVG TFIAKVSRGR TIREFLIGVL FVPSAITFLW MTVFGNSAID AIMNHGASYL AEAVSTDVSV ALFKFFEHLP FSNLLSVIAL CLVVTFFVTS SDSGSLVIDN LTSGGDDNAP VWQRIFWAVL EGAVAAVLLL AGGLQALQTA AIASAMPFLL VMLLMCLGLY HALKDDWLKL SNVQSHNTSV QYATTNMSWQ DRIGVLVSQP SHSEAKAFIE TVVEPALLEV KTIFVSKGLA AQIIHLDGRV RLIIGPDERL PFVYGLWTRA FVTAASTESG AEQANDTEIA TERTAAETPN ATESAYYRVE VFLEHGGQQY DVMGYTQEQI IADIVSQYER YLHYLHLSNA ELA
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