| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1286 |
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| Symbol | |
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| ID | 4017573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1507007 |
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| End bp | 1508002 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637955282 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_562295 |
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| Protein GI | 91792644 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGATA ACAAATCAAT ACTCATTACG GGCGGCACTG GGTCATTTGG TCATAAGTAT
ACAAAAACCA TACTCGAGCG CTATAAGCCC AAGCGATTGA TCATCTTGTC TCGAGATGAA
TTAAAGCAAT ATGAAATGCA ACAGAAGTTC AACGTTCCCT GTATGCGATA TTTTCTCGGT
GATGTTCGGG ATGGTGACCG TATGGAACAA GCCTTTCGTG ATGTGGATTA TGTCATACAT
GCTGCGGCAA TTAAGCAAGT GCCTGCGGCC GAATACAACC CCATGGAATG TATAAAAACA
AATATTTACG GCGCTGAAAA TGTCATAAAG GCTGCGATTT CCAATAAAGT CACCCGAGTG
ATTGCGTTAT CGACAGACAA AGCGGCGAAC CCAATAAATT TATATGGCGC AACCAAATTG
GCTTCGGATA AGTTATTTGT TGCTGCCAAC AATATGGTGG GCGAGGGTAA AACACGTTTT
TCAGTAGTGC GTTATGGTAA TGTTGTTGGC TCTCGTGGTT CTGTGGTGCC TTTCTTTAAG
TCGTTAATCG AAAGCGGCGC GGCGTCATTA CCTATCACTC ACGAAGAGAT GACCCGGTTT
TGGATCACCT TGCAAGATGG TGTCGACTTT GTGTTAAAAA ACTTCAGCCG TATGCAGGGA
GGAGAAATTT TTGTGCCTAA AATTCCCTCT GTACGTATTA CTGAGTTAGC CTCCGCCTAC
GGCCCTTCAT TAAAACAAGA GATTATAGGA ATAAGGCCTG GTGAGAAGCT GCATGAGATC
ATGTGCCCTC GCGATGACTC ACACCATACT ATTGAGTTTG ACGATCACTA TGTGATCACG
CCTAGCATTA CCTTTTTTGG TAAAGAACAT AATTATCATA CTAATCTCTT GGGTGAGGTC
GGCAATCTGG TAGAGATGGG GTTTGAGTAT AACTCTGGAA ATAACGGACA TTTCTTAACC
CAAGCTGAGA TCACAGCAAT GGACAAAAAC GCATGA
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| Protein sequence | MFDNKSILIT GGTGSFGHKY TKTILERYKP KRLIILSRDE LKQYEMQQKF NVPCMRYFLG
DVRDGDRMEQ AFRDVDYVIH AAAIKQVPAA EYNPMECIKT NIYGAENVIK AAISNKVTRV
IALSTDKAAN PINLYGATKL ASDKLFVAAN NMVGEGKTRF SVVRYGNVVG SRGSVVPFFK
SLIESGAASL PITHEEMTRF WITLQDGVDF VLKNFSRMQG GEIFVPKIPS VRITELASAY
GPSLKQEIIG IRPGEKLHEI MCPRDDSHHT IEFDDHYVIT PSITFFGKEH NYHTNLLGEV
GNLVEMGFEY NSGNNGHFLT QAEITAMDKN A
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