| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1275 |
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| Symbol | |
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| ID | 4017543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1492929 |
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| End bp | 1494068 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955271 |
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| Product | cytochrome d ubiquinol oxidase, subunit II |
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| Protein accession | YP_562284 |
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| Protein GI | 91792633 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
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| TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00000986735 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTGATT ATGAAACCGT AAGGTTTATC TGGTGGGCCT TGATTGGGGT ATTGCTGATT
GGCTTTGCCA TCACTGATGG GTTCGACATG GGGGTTGGCG CTTTATTGCC GATTATCGGT
AAGGATGACA CAGAGCGCCG TATCATGATC AATTCCATCG CGCCCCATTG GGATGGTAAT
CAGGTGTGGT TAGTGACGGC GGCGGGGGCA TTATTTGCCG CTTGGCCCAT GGTTTATGCG
GTGGCGTTTT CCGGTTTTTA TGTGGCCATG ATGCTAGTGC TGTTTGCCTT GTTCCTGCGT
CCAGTGGGTT TTGATTATCG CTCTAAAATC GCAGAACCAA GATGGCGTAA GAGTTGGGAT
AGAGCCATTT TTGTTGGTAG CACAGTGCCG CCGTTTGTCA TAGGTGTCGC CTTTGGTAAT
TTGCTGCAAG GGGTCCCCTT TGATTTCGAT CAGTACCTGC GTGCCACCTA TCATGGCGGC
TTTTTCGGTT TGCTTAATCC TTTAGGCATA TTGTCAGGCT TATTAGCTGT GTCCATGGTC
GTGATGCAGG GCAGTGCTTG GTTACAAATG AAAACCCAAG GTGAGCTAAG AGTGAGAGCG
AGTCGCACAG CAATGTGGAG CGCATCGACG TTACTCATCT TGTTTGGCGC TGCAGGTTTG
TGGGTTGCTT TTGGTTTAGA AGGCTATCAA GTGGTGAGCA CCTTGTCCCA TTCTGGGCCT
TCAAACCCCA CCACTAAAGA AGTGGTGTTG GTAACCGGTG CTTGGCTTGG GAATTATCAG
TTATATCCAT GGACCATAGC CTTGCCAGTC ATTGGACTCA CTATGCCCTT GGTGGTGATG
TTAGCCAGTC ACTTTAGCCG TTGTGGCTGG GTATTTTTTG CAAGCTCTCT GACACAAGCC
GGGGTGATAT TAACCTTTGG CGCGGCATTG TTTCCCTTTA TTATGCCCTC ATCACTTGCG
CCAAATATGA GCTTAACTAT GTGGGATGCC ACCGCTAGTG AGATGTCATT AACCGTGATG
ACTGTGGTTG CTATGATATT TATCCCCTTG ATATTGAGCT ACACCTTATG GACCTATTTT
AAGATGCGTG GCCGTTTAAG CCGTGATTTT ATTGAGAACA ACAGCACTTC ACTCTATTGA
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| Protein sequence | MFDYETVRFI WWALIGVLLI GFAITDGFDM GVGALLPIIG KDDTERRIMI NSIAPHWDGN
QVWLVTAAGA LFAAWPMVYA VAFSGFYVAM MLVLFALFLR PVGFDYRSKI AEPRWRKSWD
RAIFVGSTVP PFVIGVAFGN LLQGVPFDFD QYLRATYHGG FFGLLNPLGI LSGLLAVSMV
VMQGSAWLQM KTQGELRVRA SRTAMWSAST LLILFGAAGL WVAFGLEGYQ VVSTLSHSGP
SNPTTKEVVL VTGAWLGNYQ LYPWTIALPV IGLTMPLVVM LASHFSRCGW VFFASSLTQA
GVILTFGAAL FPFIMPSSLA PNMSLTMWDA TASEMSLTVM TVVAMIFIPL ILSYTLWTYF
KMRGRLSRDF IENNSTSLY
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