| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1256 |
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| Symbol | ispG |
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| ID | 4017471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1466827 |
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| End bp | 1467942 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955252 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_562265 |
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| Protein GI | 91792614 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0133657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATAGCG AAACACCAAT TAAACGTCGT CCTTCCAGCC GCATTTACGT GGGCAAAGTG
CCTATCGGTG ATGGTGCACC TATTGCCGTC CAGTCGATGA CTAACACTAA GACTACCGAT
GTTGAGGCAA CCATTGCCCA AATTCGTGCC TTAGAAAAAG TCGGTGCTGA CATAGTGCGT
GTTTCTGTGC CTACCATGGA CGCCGCCGAA GCCTTTAAAA TCATCAAGCA ATCAGTCAAT
GTGCCCCTAG TGGCTGACAT TCATTTCGAT TACCGTATCG CCTTAAAAGT GGCTGAGTAC
GGCGTAGATT GCTTAAGAAT TAATCCTGGC AATATCGGTA ACGAACAACG CATACGCAGC
GTAGTAGAAT GTGCTCGTGA TAACAACATT CCCATTCGTA TTGGGGTTAA CGGTGGCTCC
CTCGAAAAAG ATTTGATGGA CAAATACCGT GAACCGACAC CGCAAGCCCT GTTAGAGTCG
GCCATGCGTC ATGTGGATAT TTTAGATAGG CTGAATTTTG ATCAATTTAA GGTCAGCGTG
AAAGCCTCAG ACGTATTTTT GGCGGTAGAG TCTTATCGTT TGTTGGCTAA ACAAATTCGT
CAACCATTAC ATCTTGGCAT AACTGAAGCC GGTGGATTGC GTGCAGGTTC GGTGAAATCC
GCTGTCGGCC TTGGGATGTT ATTGGCTGAG GGAATAGGCG ATACTATCCG TATTTCACTG
GCCGCCGATC CTATTGAAGA AATTAAAGTG GGTTTTGATA TTCTTAAATC ACTGCGTATT
CGTAGCCGTG GGATTAACTT TATTGCTTGT CCATCTTGCT CTCGCCAAGA ATTTGATGTG
ATCAATACGG TGAATGAGCT CGAACGTCGC CTTGAAGATC TTGTGACCCC TATGGATGTA
TCCATTATAG GTTGCGTGGT CAACGGACCA GGTGAAGCAT TAGTGTCCCA TATAGGCTTG
ACCGGTGGCG CCAACAAAAG TGGCTATTAT GACGATGGCG TGCGCCAGAA AGAGCGTTTT
GACAACCTGA ACTTGGTTGA CTCACTGGAA GCCAAAATTC GCGCTAAGGC AAGCTTGATG
GCTAATCGCA TTGCGATTTC AGACAAGACA GATTAA
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| Protein sequence | MYSETPIKRR PSSRIYVGKV PIGDGAPIAV QSMTNTKTTD VEATIAQIRA LEKVGADIVR
VSVPTMDAAE AFKIIKQSVN VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEQRIRS
VVECARDNNI PIRIGVNGGS LEKDLMDKYR EPTPQALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE SYRLLAKQIR QPLHLGITEA GGLRAGSVKS AVGLGMLLAE GIGDTIRISL
AADPIEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV INTVNELERR LEDLVTPMDV
SIIGCVVNGP GEALVSHIGL TGGANKSGYY DDGVRQKERF DNLNLVDSLE AKIRAKASLM
ANRIAISDKT D
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