| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1254 |
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| Symbol | |
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| ID | 4017469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1464886 |
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| End bp | 1465668 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955250 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_562263 |
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| Protein GI | 91792612 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.146515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTACGGAT TACAGAAAGT TTGCCTTATC ATTGCCACCC TGTCGTTAAC GACAGGGTGT
ATCACTGAAA GCACTTACCG CGGCACTGAT GTTCAGGTCT CTGAACGTAA GTTAGATAAA
CTCGCCGCCG CCCGTGAGCG GATGCAGTTA GGACTCACTT ACCTGAATCG GGGTAATCCT
GAACAAGCGA AATACAACCT TGATAAAGCC GTCGAATACG CACCAGAGCA CAGCGATGTG
TATGTGGCGC TCGCCTATTA TTATCAGACG GTTGGCGATC TTATTCGTAC CGAAGAAGCT
TATCAAACCG CCATCAATGC CTCTGATGCC ACTGGCGATG CCAAGAACAA CTTTGGGGTG
TTTTTGTGTC AGCAAAAGAA GTACCCTGAA TCAGAAACCA TGATTCTGGC TGCGATTAAT
ACCCCTAAGT ACACCCGCAC TGCATCAAGC TATGAAAACT TAGGTTTATG CAGCCGTGCG
GCCGGAAAAT TAGAAAAAGC GCGACAGTAT TTTGAGATAG CGTTACAGTA TGACCCAAGA
CGAGAAGTCG CCTTATTAGA ATTAACTGAA TTAGCCATAC TTGACGGCAA TTATTCTATG
GCGCGAGAGC AATTAGCGCA TTATCATAAT AGGGTCAATG AGTCGCCTCA AAGCTTAGCT
TTGGGGATTA AAATTGAGCA GGCCGTCAGT GACTTCGACG CTGCTAAACG ATTTGGTATA
GTGTTACTGG CCAAATTCCC CGCATCCACC CAAGCACAAG AATACAGAGC TAATTTGCAG
TAA
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| Protein sequence | MYGLQKVCLI IATLSLTTGC ITESTYRGTD VQVSERKLDK LAAARERMQL GLTYLNRGNP
EQAKYNLDKA VEYAPEHSDV YVALAYYYQT VGDLIRTEEA YQTAINASDA TGDAKNNFGV
FLCQQKKYPE SETMILAAIN TPKYTRTASS YENLGLCSRA AGKLEKARQY FEIALQYDPR
REVALLELTE LAILDGNYSM AREQLAHYHN RVNESPQSLA LGIKIEQAVS DFDAAKRFGI
VLLAKFPAST QAQEYRANLQ
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