Gene Sden_1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1253 
Symbol 
ID4017468 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1463729 
End bp1464850 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content45% 
IMG OID637955249 
Productribosomal RNA large subunit methyltransferase N 
Protein accessionYP_562262 
Protein GI91792611 
COG category[R] General function prediction only 
COG ID[COG0820] Predicted Fe-S-cluster redox enzyme 
TIGRFAM ID[TIGR00048] radical SAM enzyme, Cfr family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.405878 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAGA AAAAAATCAA TTTATTAGAT CTTGATCGTA AAGGTTTACG GGCTTTATTT 
ACCGAAATGG GGGAAAAACC CTTTCGTGCA GATCAGCTAA TGAAATGGAT TTATCATTTT
GGTGTCAGTG ATTTCGAGGA AATGACCAAC ATCAATAAAG TATTACGCTC AAAACTGGCC
GAGCGCTGCG TTATTGTGGC GCCGGAGATC GCAAGCTTCC AAAAATCTGC CGATGGCACC
ATTAAATTTG CCATCAATGT GGGCCAAGGC CAAGAAGTCG AAACCGTGTA TATTCCAGAA
GATGACAGAG CCACCTTATG TGTGTCTTCT CAGGTTGGCT GTGCCTTGGA GTGTACTTTC
TGTTCAACCG GCCAGCAAGG CTTTAACCGT AACTTAACCG TGTCGGAAAT CGTCGGTCAA
ATTTGGCGAG TGGCTCAATT CTTAGGCTTT GTTAAAACCA CAGGCGAGCG TCCTATCACT
AACGTGGTGA TGATGGGCAT GGGTGAACCC TTGCTTAACC TGAAAAACGT GATCCCTGCG
ATGGATATCA TGTTAGATGA TTTCGGCTTT AGCTTGTCTA AGCGCCGAGT GACCCTATCG
ACTTCGGGTG TAGTACCTGC ATTGGATATT TTAGGTGATT CTATCGATGT GGCCTTAGCT
GTGAGCATTC ATGCGCCCAA TGATGAGCTG CGTGACATAC TTGTGCCAGT GAATAAGAAG
TACCCTTTGG CGGAATTCTT AGGGGGTATT CGTCGTTATA TTGCTAAGTC TAATGCCAAT
CGCGGCCGTG TAACTGTGGA ATATGTGATG CTTGATCACA TCAACGACAG TACAGAGCAA
GCCCATGAAC TGGCTAAATT AATGAAAGAC ACTCCTTGTA AGGTTAATTT AATCCCGTTT
AACCCATACC CAGGTTCGCC TTATGGTCGC TCGTCTAATT CTCGCATCGA CAGATTTTCA
AAAGTGCTGA TGGAATACGG CTTCACTGTC ATAGTGCGTA AGACTCGTGG TGATGATATC
GATGCCGCTT GTGGGCAGCT TGCTGGCGAC ATTCGTGACA GAACTAAGCG TTTAGCAAAA
AAACGCATGC AAGAGAACCA AATATCGGTC ACAATGGATT AA
 
Protein sequence
MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWIYHF GVSDFEEMTN INKVLRSKLA 
ERCVIVAPEI ASFQKSADGT IKFAINVGQG QEVETVYIPE DDRATLCVSS QVGCALECTF
CSTGQQGFNR NLTVSEIVGQ IWRVAQFLGF VKTTGERPIT NVVMMGMGEP LLNLKNVIPA
MDIMLDDFGF SLSKRRVTLS TSGVVPALDI LGDSIDVALA VSIHAPNDEL RDILVPVNKK
YPLAEFLGGI RRYIAKSNAN RGRVTVEYVM LDHINDSTEQ AHELAKLMKD TPCKVNLIPF
NPYPGSPYGR SSNSRIDRFS KVLMEYGFTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK
KRMQENQISV TMD