Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1253 |
Symbol | |
ID | 4017468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1463729 |
End bp | 1464850 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637955249 |
Product | ribosomal RNA large subunit methyltransferase N |
Protein accession | YP_562262 |
Protein GI | 91792611 |
COG category | [R] General function prediction only |
COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.405878 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAGA AAAAAATCAA TTTATTAGAT CTTGATCGTA AAGGTTTACG GGCTTTATTT ACCGAAATGG GGGAAAAACC CTTTCGTGCA GATCAGCTAA TGAAATGGAT TTATCATTTT GGTGTCAGTG ATTTCGAGGA AATGACCAAC ATCAATAAAG TATTACGCTC AAAACTGGCC GAGCGCTGCG TTATTGTGGC GCCGGAGATC GCAAGCTTCC AAAAATCTGC CGATGGCACC ATTAAATTTG CCATCAATGT GGGCCAAGGC CAAGAAGTCG AAACCGTGTA TATTCCAGAA GATGACAGAG CCACCTTATG TGTGTCTTCT CAGGTTGGCT GTGCCTTGGA GTGTACTTTC TGTTCAACCG GCCAGCAAGG CTTTAACCGT AACTTAACCG TGTCGGAAAT CGTCGGTCAA ATTTGGCGAG TGGCTCAATT CTTAGGCTTT GTTAAAACCA CAGGCGAGCG TCCTATCACT AACGTGGTGA TGATGGGCAT GGGTGAACCC TTGCTTAACC TGAAAAACGT GATCCCTGCG ATGGATATCA TGTTAGATGA TTTCGGCTTT AGCTTGTCTA AGCGCCGAGT GACCCTATCG ACTTCGGGTG TAGTACCTGC ATTGGATATT TTAGGTGATT CTATCGATGT GGCCTTAGCT GTGAGCATTC ATGCGCCCAA TGATGAGCTG CGTGACATAC TTGTGCCAGT GAATAAGAAG TACCCTTTGG CGGAATTCTT AGGGGGTATT CGTCGTTATA TTGCTAAGTC TAATGCCAAT CGCGGCCGTG TAACTGTGGA ATATGTGATG CTTGATCACA TCAACGACAG TACAGAGCAA GCCCATGAAC TGGCTAAATT AATGAAAGAC ACTCCTTGTA AGGTTAATTT AATCCCGTTT AACCCATACC CAGGTTCGCC TTATGGTCGC TCGTCTAATT CTCGCATCGA CAGATTTTCA AAAGTGCTGA TGGAATACGG CTTCACTGTC ATAGTGCGTA AGACTCGTGG TGATGATATC GATGCCGCTT GTGGGCAGCT TGCTGGCGAC ATTCGTGACA GAACTAAGCG TTTAGCAAAA AAACGCATGC AAGAGAACCA AATATCGGTC ACAATGGATT AA
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Protein sequence | MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWIYHF GVSDFEEMTN INKVLRSKLA ERCVIVAPEI ASFQKSADGT IKFAINVGQG QEVETVYIPE DDRATLCVSS QVGCALECTF CSTGQQGFNR NLTVSEIVGQ IWRVAQFLGF VKTTGERPIT NVVMMGMGEP LLNLKNVIPA MDIMLDDFGF SLSKRRVTLS TSGVVPALDI LGDSIDVALA VSIHAPNDEL RDILVPVNKK YPLAEFLGGI RRYIAKSNAN RGRVTVEYVM LDHINDSTEQ AHELAKLMKD TPCKVNLIPF NPYPGSPYGR SSNSRIDRFS KVLMEYGFTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK KRMQENQISV TMD
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