Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1234 |
Symbol | |
ID | 4017283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1436850 |
End bp | 1439339 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637955230 |
Product | type III restriction enzyme, res subunit |
Protein accession | YP_562243 |
Protein GI | 91792592 |
COG category | [V] Defense mechanisms |
COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTTA ATAAAGCAAA GCTAACCGAA ACCGATATCA TCACAAAATT CATCATGCCG GCGATTAAAA ATGCGGGCTG GGATGATATG ACGCAAATTC GCCAAGAGGT GAAACTGCGT GACGGTAAAG TGATTGTTCG CGGCCAATTA GGCGTGCGTA AAACGGTTAA GTCTGCTGAT ATCGTGCTTT ATCATAAACC CAGTATGCCG CTGGCTGTTA TTGAGGCTAA AGCCAATAAA CATGAAGTGG GCAAAGGCAT GCAGCAGGGG CTAGATTATG CCCGTTTGCT CGATGTACCT TTCATCTTTG CCTCTAATGG CGATGGTTTT ATCTTTCACG ATAAAACCCA CGGCGTCACA AACAGTCTCG GCATCGCTGA GACACATCAT CTCGAAACAG AAATCCGCTT AGAAGACTTT CCAACGCCGC AACAGCTTTG GACTAAATAC TGTATCTGGA AAGGCTACAC CCAAGCGCAG CTGCCAATAA TTAACCAAGA ATATCATGAT GATGGCACCG GCAAGCACCC GCGGTATTAC CAGCTGCAAG CTATCAATAA AACCGTAGAA GCCATTTCAT CGGGTAAAGA CCGTGTATTA CTCGTGATGG CGACCGGCAC AGGTAAAACC TACACCGCAT TTCAAATCAT CTGGCGATTA TGGAAGTCCC GCGCCAAGAA GCGCATCTTG TTTTTAGCCG ACCGCAATAT TTTGGTTGAT CAAACCCGCA TTAATGACTT TCAGCCCTTT GGCACTTCCA TGACTAAAGT CACTGGACGC ACGGTCGATC CTGCATTTGA AATCCATCTA GCCTTATACC AAGCATTAAC CGGCCCAGAA GAAAGCCAAA AAGCCTTTAA GCAAGTCGAC CCAGACTTCT TTGACTTAAT CATAATCGAC GAGTGCCACC GCGGTAGTGC AGCAGATGAC AGTGCATGGC GTGAAATTTT AGAATATTTC AGTAGCGCCG CCCAAGTTGG CCTTACTGCC ACCCCTAAAG AAACTGATGA AGTATCAAAC TCAGACTACT TTGGCGACCC TGCCTACAGT TATTCCCTCA AGGAAGGCAT TGAAGACGGT TTTTTAGCGC CATACAAAGT GGTGCGGGTA GATATCGATG TCGATTTACA AGGTTGGCGC CCCACAAAAG GCCAAATCGA TAATAACGGT GAAGTGATAG AAGACAGAAT TTATAATCAA AAAGACTTCG ACCGCACCAT GGTGATTGAT GAGCGCACCC AGCTGGTAGC CGAAACCATC ACCAACTACC TAAAACGCAC CGATCCTATG GCCAAAACTA TCGTGTTTTG CAACGACATT GACCACGCCG ATCGCATGCG CCGCGCTATT GCCAACCTTA ACCCTGAGCA AATGGCCAAG AATGAAAAAT ACGTGATGAA AATCACCGGC GATGATGAAA TAGGCAAAGG GCAGCTGGAC AACTTTATTA ATCCTAAAAA AGCCTACCCT GTTATTGCCA CTACCTCTGA GCTTATGACC ACAGGCGTCG ATGCTAAAAC CTGTAAGTTA GTGGTGCTGG ATCAAAACAT TCAGTCCATG ACCAAGTTTA AACAGATCAT TGGCCGTGGC ACCCGCATTG ACGACAGATA CGGTAAGCTG TGGTTTACTA TTTTAGACTT CAAAAAAGCC ACTGAACTGT TTGCCGACGA ACGCTTTGAT GGTACCCCAG AAAAAGTGAT TAAAGTGACA CCCGCAGATA TCGAAGATCA AGGCATTGAT ATTGATGCGG CTAATGATGA CCTCGATAAC GGTGCGGCAG AAAATCAAGG TGATCACCAA AATGATGAAC CGGATACTAA TCAAAATGAC ACCATAAACG ACCCTAAAGG TGATGCTAGC CTTGATGAAA AATGGGACGA AGGTGAATGG ACTGACGATG AACCCCGTAA AATAAACAAA TACCGCGTGT CAGGGGTCAC CGTCAGTAAA GTGGCCGAGC GGGTACAGTA TTACGACAGC GACGGTAAAT TAGTTACCGA ATCTTTTAAA GATTACACCC GTAAAACCAT GGCTAAACAG TTCAGCTCGT TAGATGAATT CGTCAAGCGT TGGAATGAGT CAGACCGCAA ACAAGCCGTG ATTGATGAAT TGGCGCTGGA AGGCATTATT TGGTCGGCGT TAGAGGAAGA AGTGGGTAAA GACATGGACC CCTTCGATAT GATTTGCCAC GTAGTGTACG ATCAACCACC ACTCACCCGC GCCGAACGAG TAAATAACGT GCAAAAGCGC AATTACTTCA CTAAATATTC AGCCACAGCA CAAGCGGTAC TGCAGAATTT ACTGGTAAAA TATGCTGATG TTGGCGTGCA AGAAATTGAA AACATGCAAG TGCTCAAAGT TGCCCCATTT ACCGAGTACG GTAATTTGAG TGAAATCGTT AAAAAAGGCT TTGGCGGCAA ACAAGAATAC GAGCAAGCCA TCAGTGAATT AGAAGCGCAG ATTTATCAAA TTCACCAGCA AACGGCCTAG
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Protein sequence | MSVNKAKLTE TDIITKFIMP AIKNAGWDDM TQIRQEVKLR DGKVIVRGQL GVRKTVKSAD IVLYHKPSMP LAVIEAKANK HEVGKGMQQG LDYARLLDVP FIFASNGDGF IFHDKTHGVT NSLGIAETHH LETEIRLEDF PTPQQLWTKY CIWKGYTQAQ LPIINQEYHD DGTGKHPRYY QLQAINKTVE AISSGKDRVL LVMATGTGKT YTAFQIIWRL WKSRAKKRIL FLADRNILVD QTRINDFQPF GTSMTKVTGR TVDPAFEIHL ALYQALTGPE ESQKAFKQVD PDFFDLIIID ECHRGSAADD SAWREILEYF SSAAQVGLTA TPKETDEVSN SDYFGDPAYS YSLKEGIEDG FLAPYKVVRV DIDVDLQGWR PTKGQIDNNG EVIEDRIYNQ KDFDRTMVID ERTQLVAETI TNYLKRTDPM AKTIVFCNDI DHADRMRRAI ANLNPEQMAK NEKYVMKITG DDEIGKGQLD NFINPKKAYP VIATTSELMT TGVDAKTCKL VVLDQNIQSM TKFKQIIGRG TRIDDRYGKL WFTILDFKKA TELFADERFD GTPEKVIKVT PADIEDQGID IDAANDDLDN GAAENQGDHQ NDEPDTNQND TINDPKGDAS LDEKWDEGEW TDDEPRKINK YRVSGVTVSK VAERVQYYDS DGKLVTESFK DYTRKTMAKQ FSSLDEFVKR WNESDRKQAV IDELALEGII WSALEEEVGK DMDPFDMICH VVYDQPPLTR AERVNNVQKR NYFTKYSATA QAVLQNLLVK YADVGVQEIE NMQVLKVAPF TEYGNLSEIV KKGFGGKQEY EQAISELEAQ IYQIHQQTA
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