| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1213 |
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| Symbol | alaS |
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| ID | 4017736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1411645 |
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| End bp | 1414269 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637955203 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_562222 |
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| Protein GI | 91792571 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0239363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAGA CCACCGCGAA GTTAAGAAGT GCTTTTTTGG CCTATTTTGA AACTCAAGGC
CACCAAGTTG TCGACAGTAG TTCATTAGTC CCTCATAACG ATCCAACCTT GCTTTTTACC
AATGCGGGGA TGAATCAATT TAAAGACGTA TTCTTAGGGA TGGATAAGCG CAGCTACAGC
CGCGCCGTGT CTTCTCAGCG TTGCGTGCGC GCCGGCGGTA AGCATAACGA TCTGGATAAC
GTAGGTTATA CCGCCCGTCA CCACACCTTT TTCGAGATGC TAGGTAACTT CAGTTTCGGC
GATTATTTTA AAGAAGAAGC CATACGTTTC GCGTGGACCT TCTTAACCGA AACCTTAAAG
CTGCCAACAG AGCGTCTGTG CGTCACCATC TATGAAACCG ACGATGAAGC CTTCGAGCTT
TGGAATAAGA AAATCGGGGT CGCCGCTGAA AACATCATTC GCATCGGCGA TAACAAGGGG
GCGCCTTACG CCTCTGATAA CTTTTGGCAG ATGGGTGACA CAGGTCCTTG TGGTCCTTGC
AGTGAGATAT TCTACGATCA TGGCGATCAC ATCTGGGGTG GACGCCCTGG TACGCCTGAA
GAAGATGGCG ATCGCTTCAT CGAAATTTGG AACATAGTAT TCATGCAGTA CAACCGTCAA
GCCGACGGCG CTATGCTGCC GCTGCCTAAG CCATCGGTCG ATACCGGCAT GGGCATTGAG
CGTATTGCTG CCATCATGCA GGGTGTGCAT TCAAACTATG AAATTGATAT CTTCAAACAG
CTGATCGCTA AAACCGCTGA AATCATAGGT GTCAGTGATT TAGAAAATAA ATCATTGCGA
GTGATTGCCG ACCATATTCG CTCATGTGCC TTCTTGATAG CCGATGGCGT GATGCCGTCG
AACGAAGGGC GTGGTTATGT GCTGCGCCGT ATTATTCGCC GCGCCGTGCG TCATGGTAAT
AAGTTAGGCG CGACCGATAC CTTCTTTTAT AAATTGGTGC CGACCTTGAT CAGTGTGATG
GGTGATGCCG CTAAAGGCTT AGTTGAAACC CAAGTCATTG TCGAAAAAGC CCTTAAAGCC
GAAGAAGAGC AGTTTGCCCG CACCTTAGAG CGTGGCCTTG GTTTGCTGGA CAACGCCTTA
AATGAGTTAT CTGGCAAGGT GCTCGATGGT GACACGGCAT TTAAGCTGTA TGACACCTAT
GGCTTTCCCG TGGATTTAAC CGCTGACGTG TGCCGCGAGC GTGATATCAC AGTGGACGAA
GCCGGCTTTG AAGCGGCCAT GGCTGAACAG CGTAGCCGCG CACAAGCCGC CGGTAACTTT
GGCGCCGATT ACAACAAACA GCTCATTATC GATGAAGAAA CACAATTTTG TGGTTATAAA
GGCCTAAGCG GTGAAGCAAA CGTGGTTGCC TTGTACTTAG ATGGCCAAGC CGTGAATGAA
GTGACTCAAG GACAAGATGC GGTTGTGGTA CTCAATAACA CCCCATTCTA CGCCGAATCT
GGTGGTCAAG TGGGTGATAA AGGCGTACTT AGCGCACAAG GCATCAACTT TAGCGTGACG
GATACGCAAA AGTTTGGTCA GGCTACGGGT CATCAAGGTA AAGTGCTTGA AGGCAGTATC
AAAGTGGGCA CTAAGCTTGC TGCAGAGGTT AATAAAGACT TACGTCAGCG CACTGAGCTT
AACCACTCGG TGACTCACTT GTTGCATGCA GCGCTTCGCC AAGTGATTGG CACCCACGTG
ACTCAGAAAG GCTCGCTGGT AAACCCAGAG CGCCTACGCT TTGACTTTGC CCATTTTGAA
GGCGTAAAAG CAGCAGAGCT TAAGCAAGTT GAAGAGTTAG TGAATGCACA AATTCGCTGT
AACCATGAAC TCAATACCGC AGAAATGGCC ATAGATGAAG CTAAAGAGAA AGGCGCTATG
GCGCTCTTTG GTGAAAAGTA TGACGAAAAA GTCCGGGTTG TGACCATGGG GGATTTCTCC
ATTGAGCTCT GTGGTGGTAC CCATGTGGGC CGCACCGGTG ACATAGGTTT ATTTAAAATC
ACCTCTGAAG CGGGTATTGC GGCTGGCGTT CGCCGTATTG AAGCTGTCAC AGGTGCAGCG
GCCATGGCCT ATGTGGCCGA GCAGCAAGCT ATGCTTGATG AGGCGGCGGG ACTGCTAAAA
TCTGACTCAG CTTCTGTAGT TGCTAAGTTA AAGGCGCAAC TTGATAAAAC CAAACAGCTT
GAAAAAGAGC TGTCGCAACT TAAAGACAAG TTAGCGGCGG CGGCGAGTGC GGACATGGCC
GGTGATGCGC AAGACATCAA TGGCGTGAAA GTACTAGTGA AAAAACTCGA AGGTGTGGAC
CCAGGTTCAC TTCGTGGTCT ACAGGATGAA CTAAAGCAAA AGCTTAAGTC GGCAATTATC
CTGTTAGGCA CAGCTAAGGA CGGTAAGGTT AACCTGATTG CTGGCGTGAG CAACGATTTA
ACCGCTAAAG TGAAAGCGGG TGAGTTGGTT GCCATGGTCG CTCAGCAAGT GGGCGGTAAG
GGCGGTGGTC GCCCTGACAT GGCTCAAGCG GGGGGCACTC AGGTTGAAAA CTTAGATGCG
GCGTTAGCAT CGGCAAGCAC TTGGATAGCC GAGCGTCTTG CATAA
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| Protein sequence | MFETTAKLRS AFLAYFETQG HQVVDSSSLV PHNDPTLLFT NAGMNQFKDV FLGMDKRSYS
RAVSSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKEEAIRF AWTFLTETLK
LPTERLCVTI YETDDEAFEL WNKKIGVAAE NIIRIGDNKG APYASDNFWQ MGDTGPCGPC
SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ADGAMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFKQ LIAKTAEIIG VSDLENKSLR VIADHIRSCA FLIADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATDTFFY KLVPTLISVM GDAAKGLVET QVIVEKALKA
EEEQFARTLE RGLGLLDNAL NELSGKVLDG DTAFKLYDTY GFPVDLTADV CRERDITVDE
AGFEAAMAEQ RSRAQAAGNF GADYNKQLII DEETQFCGYK GLSGEANVVA LYLDGQAVNE
VTQGQDAVVV LNNTPFYAES GGQVGDKGVL SAQGINFSVT DTQKFGQATG HQGKVLEGSI
KVGTKLAAEV NKDLRQRTEL NHSVTHLLHA ALRQVIGTHV TQKGSLVNPE RLRFDFAHFE
GVKAAELKQV EELVNAQIRC NHELNTAEMA IDEAKEKGAM ALFGEKYDEK VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEAGIAAGV RRIEAVTGAA AMAYVAEQQA MLDEAAGLLK
SDSASVVAKL KAQLDKTKQL EKELSQLKDK LAAAASADMA GDAQDINGVK VLVKKLEGVD
PGSLRGLQDE LKQKLKSAII LLGTAKDGKV NLIAGVSNDL TAKVKAGELV AMVAQQVGGK
GGGRPDMAQA GGTQVENLDA ALASASTWIA ERLA
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