| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1212 |
|---|
| Symbol | |
|---|
| ID | 4017735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1410474 |
|---|
| End bp | 1411508 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637955202 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_562221 |
|---|
| Protein GI | 91792570 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2267] Lysophospholipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAT TTGTTATCCC ACTGATAGTG AGCTTGGGCG TCAGTGTGTT ATTGCTAGGG
TTAGCCATCA CTTTTGGTGG TCCCAAGCCT GTAGCTGCAC TGGACAGCAT TAGCGAGCCC
TTTAAAAATC TTGATTACAG TGAGTTGCCT GAGGTCAGTT TTTTTAATGC CAGAGATGGG
CAGGCCTTGG CCTATCGATT TTACCCACCG ACTTTTTCAT CGGCAGTTAA AGCTCAGGTT
AAAACAGAGG CTCAAATTGA GAGCAGGGGC AGTGTGGTGT TGGTGCATGG CTCCTCTGCG
AGCAGTCAGA GCATGCATCA ATTGGCGATG GCATTTGCGA GCGCAGGTTT TAGTGCCTAT
TCATTAGATA TTCGTGGTCA TGGGGAGTCT GGAAAAAGTG GTGACATTAC TTACTTGGGC
CAGCTTGAGC ATGACTTAGA AGATTTTGTT TCAGAGGTGA AGCTACAGGG CAGTAAGAGT
TTAGTGGGAT TTTCTTCTGG CGGTGGTTTT GCTCTGAGAT TTGCAGGCAG TGACAGGCAA
GTCTTGTTTG ACAACTATTT GTTGTTGTCG CCTTTTATTA GCCAAGATTC GCCCACCAGT
CGCAATAATG GCAGTGGCGG CTGGGTGAGC GTCGGCGTGC CAAGGCTTGT GGCAATCAGC
ATACTCGATG CCATGGGACT CAAGCTGTTT AATCATCTGC CAGTGATCCG CTTTGCCTTA
CGAGAAACCT CGAAAGTTAA GTTAACTCAT AGCTACAGTT ACTTACTCGC GACTAACTTT
CGCCCGAAAG CTGACTATAA CGCCAATATC GCCGCGATTA AGCAGCCTTT GTCCGTGCTG
GTTGGCGATC GGGATGAGCT GTTTAACCCC AAGGCGTTTA CTGGCTTATT TGAAACGACT
AATGCTAAGG TGAACATAAT CCAAGGGGTC AATCATGTTG GAATGATTTT ATCGCCAAAC
GCACTGGATA AGGCGGTGAC TCAGTTGGCT GCCTTAGTTG AAACGGACTC AGCTAAGCGA
CTCGAGTCAA AGTAG
|
|---|
| Protein sequence | MKSFVIPLIV SLGVSVLLLG LAITFGGPKP VAALDSISEP FKNLDYSELP EVSFFNARDG
QALAYRFYPP TFSSAVKAQV KTEAQIESRG SVVLVHGSSA SSQSMHQLAM AFASAGFSAY
SLDIRGHGES GKSGDITYLG QLEHDLEDFV SEVKLQGSKS LVGFSSGGGF ALRFAGSDRQ
VLFDNYLLLS PFISQDSPTS RNNGSGGWVS VGVPRLVAIS ILDAMGLKLF NHLPVIRFAL
RETSKVKLTH SYSYLLATNF RPKADYNANI AAIKQPLSVL VGDRDELFNP KAFTGLFETT
NAKVNIIQGV NHVGMILSPN ALDKAVTQLA ALVETDSAKR LESK
|
|---|
| |