Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_1204 |
Symbol | |
ID | 4017727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 1399796 |
End bp | 1400779 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637955194 |
Product | RNA polymerase sigma factor RpoS |
Protein accession | YP_562213 |
Protein GI | 91792562 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000153411 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAGAA CAACTAACAC TGCAGTAGCA GAAAAGCTTG TAGATTTATC CACAAAAACC AAAAAAGAAG GTGCGCAAAA GAGCGACAAG GCCGTTGATC TCGTGCAGCA ACTCGAAATT GAACAACAAG TTCAAGAAGA CCTCCAAAAA AATCTTGACG CCACTCAGTT GTATTTAGGC GAAATAGGAT TTTCCCCTTT GCTTAGTGCT GAAGAAGAAG TGTTCTTCTC ACGTAAAGCC CTCAAAGGTT GCGAGAAATC TCGTAATCGC ATGATAGAAA GTAACCTAAG ACTCGTGGTG AAAATTGCCC GTCGCTACAA TAATCGTGGT TTGGCCCTGT TAGATCTTAT CGAAGAAGGT AATTTGGGCC TGATAAGAGC GGTGGAAAAG TTTGACCCAG AAAGAGGTTT CCGTTTTTCT ACTTATGCCA CTTGGTGGAT CAGGCAGACC ATAGAACGTG CGATTATGAA TCAAACTCGC ACCATACGTT TGCCAATCCA TGTGGTTAAA GAACTTAACG TCTACCTACG TACTGCAAGA CAGCTAGCAC AGAAGCTAGA TCACGAGCCA ACGGCAGAGG AAATTGCCGC CAAGCTTGAT GTCTCCACCA GTGACGTAAG CCGGATGTTA AAGCTTAATG AGAAAATTAC CTCAGTAGAC ACCCCACTGG GTGGCGATAA CGAAAAAGCA CTATTAGATG TGATTGCCGA CGACGATAGC GTAGGCCCTG ATTATCAAGT GCAAGATGAA GACTTATCCA ACTCTATTGT TGGCTGGTTA AACGAACTCA ACACCAAGCA AAGAGAAGTA CTAGCACGAC GCTTTGGTTT ATTGGGTTAC GAGCCATCGA CACTGGAAAA TGTTGGCGCA GAGATAGGTT TGACTCGAGA ACGTGTTCGT CAAATTCAAG TGGAAGCGTT AAAGCGTTTA AAAGACTTGT TAAGCAGTCA AGGTCTGTCA GTAGAGGCTC TCTTTAGAGA CTAA
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Protein sequence | MSRTTNTAVA EKLVDLSTKT KKEGAQKSDK AVDLVQQLEI EQQVQEDLQK NLDATQLYLG EIGFSPLLSA EEEVFFSRKA LKGCEKSRNR MIESNLRLVV KIARRYNNRG LALLDLIEEG NLGLIRAVEK FDPERGFRFS TYATWWIRQT IERAIMNQTR TIRLPIHVVK ELNVYLRTAR QLAQKLDHEP TAEEIAAKLD VSTSDVSRML KLNEKITSVD TPLGGDNEKA LLDVIADDDS VGPDYQVQDE DLSNSIVGWL NELNTKQREV LARRFGLLGY EPSTLENVGA EIGLTRERVR QIQVEALKRL KDLLSSQGLS VEALFRD
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