| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1200 |
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| Symbol | |
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| ID | 4017723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1396169 |
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| End bp | 1397257 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637955190 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_562209 |
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| Protein GI | 91792558 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00296391 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGAAT TACATTATTT GCATGGTAAG CCTCAGTCTC AAGGGCTACT GCGTACCCAC
AACAGTGACT TTATGGTTAA TGAAATCTTG CCTTTTAGCC CCACAGGGGA AGGCGAGCAC
CATATGCTGC ATATTCGAAA AGAAGGCTTA AATACTGTCT TCGTTGCCGA AATGATTGCC
AAATTTGCCA AGGTACACCC AAAAGAAGTG ACCTATGCCG GTCAAAAAGA CAAGCATGCC
ATCACGGAGC AATGGTTTGG GGTGCGGATC CCTGGTAAAG AAATGCCCCA ATGGGAAGAA
TTAAATAGTG ATAAGCTTAC TGTGCTGTCA AGCTCACGCC ACGGCAAAAA GTTGCGCATT
GGTGCGCTGC TTGGGAATCA ATTTATTCTA ACGCTTCGCG GGATCACAGA TGTCATTGAG
GTCAGTGAGC GTCTAGCCCT GATAGCAAAA ACTGGCGTGC CCAACTATTT TGGTGAGCAG
CGTTTTGGCC ATGATGGTAA GAATTTGGTC ATGGGCCGGC AAATGCTGTT GGGAAAGAAA
GTGAAAGACC GTAAAAAAAG CAGCATGTAT TTGTCGGCCG TGCGCTCAAA CATCTTTAAT
CAAGTGGTAT CGCACCGTTT GGCAACCCAA GGTAACACGC CGATGGACGG TGATTGTGTG
ATGCTTGCGG GCAGTCGCAG CTACTTTGTT GCAGACAGCT GGGACAGCAC AGTGCAAGCT
CGTCTCGATG AAAAAGACAT TCAGTTATCT GCGCCGCTCT GGGGCCGAGG CGCGCCATTG
GCCAAAGGCA CTGCCGCAGA ACTCGAAGCT GCGGCATTAG TGGATTATGC CAGCGATCTT
GAAGGCTTAG AAAATGCAGG ATTAGATCAA GAAAGACGAC CGCTGTTGCT GGAGCCTCAA
GGGCTTAAGT ATAAATTTGA TGCTGATGTC TTGACCTTAG AGTTCATCTT ACCTGCGGGC
AGTTTTGCCA CTTCCATATT GCGTGAAGTC TGCCTCTATC AAGATGTAAA AGAAAGGCAA
TGGCAGGAGT TTGTGAGCAC GCAAGCCCAA TCCCTTGAAG CGCAAACAAA TAGTGAGGCA
AAGCCTTAG
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| Protein sequence | MNELHYLHGK PQSQGLLRTH NSDFMVNEIL PFSPTGEGEH HMLHIRKEGL NTVFVAEMIA
KFAKVHPKEV TYAGQKDKHA ITEQWFGVRI PGKEMPQWEE LNSDKLTVLS SSRHGKKLRI
GALLGNQFIL TLRGITDVIE VSERLALIAK TGVPNYFGEQ RFGHDGKNLV MGRQMLLGKK
VKDRKKSSMY LSAVRSNIFN QVVSHRLATQ GNTPMDGDCV MLAGSRSYFV ADSWDSTVQA
RLDEKDIQLS APLWGRGAPL AKGTAAELEA AALVDYASDL EGLENAGLDQ ERRPLLLEPQ
GLKYKFDADV LTLEFILPAG SFATSILREV CLYQDVKERQ WQEFVSTQAQ SLEAQTNSEA
KP
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