| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1198 |
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| Symbol | ispD |
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| ID | 4017721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1394750 |
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| End bp | 1395475 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637955188 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_562207 |
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| Protein GI | 91792556 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00674305 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCATGA CTCACACAAC GCCACTTGTC CCCAAAAACG TCGCCATAGT GCCAGCCGCA
GGTATAGGCG CTAGAATGGC TGCGGGTATG CCAAAACAAT ACCTAACCCT TGGCGCCCAG
AGTATTCTGG GGCACACCTT AGATGCATTA CTCTCTCATC CTCAAATAGC GCAAGTCATA
GTGGCGCTGC ATCCTCATGA TGATATGTTT TTAGGCTTGC CTCAAGCTAA GCACTCAAAA
CTCTTAACCG TCATAGGTGG CGGTGAGCGG GCGGATTCAG TATTAGCAGC ATTAGCCGTT
GCCCCCCAAG ATGCATGGGC CTTAGTGCAC GACGCCGCGC GCCCTTGTTT AACCCATAGT
GATATCGATA AATTACTCGC CTCCACAAGC GAATTTCCCC AAGGGGCGAT TTTGGCAATG
CCGGTTCGAG ACACTATGAA GCGCAGCGAT GACACTGGCG TCATTAATCA TACGGTAGAC
AGGGCGCTGT TATGGCATGC ATTAACGCCG CAATATTTCC CAGTGGCTGA GTTACTCACA
AATTTATCGG CGGCGCTGAA TGCCGGCGTT GTCATTACTG ATGAAGCCAG CGCCATGGAA
TGGGCCGGTG TTTTTCCTGG GCTTGTCAGT GGCCGGGCGG ATAACATCAA GGTGACGCAC
CCTGATGATT TACACTTGGC TGGGCTTTTT ATGGCGCACT TGAGTGCTAA GCCTCTGGTG
GAATAA
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| Protein sequence | MSMTHTTPLV PKNVAIVPAA GIGARMAAGM PKQYLTLGAQ SILGHTLDAL LSHPQIAQVI
VALHPHDDMF LGLPQAKHSK LLTVIGGGER ADSVLAALAV APQDAWALVH DAARPCLTHS
DIDKLLASTS EFPQGAILAM PVRDTMKRSD DTGVINHTVD RALLWHALTP QYFPVAELLT
NLSAALNAGV VITDEASAME WAGVFPGLVS GRADNIKVTH PDDLHLAGLF MAHLSAKPLV
E
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